Strain Fitness in Dechlorosoma suillum PS around Dsui_0683

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0681 and Dsui_0682 are separated by 161 nucleotidesDsui_0682 and Dsui_0683 are separated by 161 nucleotidesDsui_0683 and Dsui_0684 are separated by 105 nucleotides Dsui_0681: Dsui_0681 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 678,563 to 679,372 _0681 Dsui_0682: Dsui_0682 - 5,10-methenyltetrahydrofolate synthetase, at 679,534 to 680,127 _0682 Dsui_0683: Dsui_0683 - soluble lytic murein transglycosylase-like protein, at 680,289 to 682,277 _0683 Dsui_0684: Dsui_0684 - putative nucleoside-diphosphate sugar epimerase, at 682,383 to 683,342 _0684 Position (kb) 680 681 682 683Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 679.331 kb on + strandat 679.339 kb on - strandat 680.121 kb on - strandat 680.173 kb on + strandat 680.181 kb on - strandat 680.186 kb on - strandat 680.254 kb on + strandat 680.257 kb on - strandat 680.299 kb on + strandat 680.306 kb on - strandat 680.338 kb on + strandat 680.346 kb on - strandat 680.502 kb on - strand, within Dsui_0683at 680.525 kb on + strand, within Dsui_0683at 680.545 kb on - strandat 680.593 kb on - strandat 680.642 kb on + strand, within Dsui_0683at 680.738 kb on + strand, within Dsui_0683at 680.804 kb on - strand, within Dsui_0683at 680.816 kb on - strand, within Dsui_0683at 680.899 kb on - strandat 680.913 kb on + strand, within Dsui_0683at 680.913 kb on + strand, within Dsui_0683at 680.913 kb on + strand, within Dsui_0683at 680.918 kb on + strand, within Dsui_0683at 681.007 kb on - strand, within Dsui_0683at 681.150 kb on + strand, within Dsui_0683at 681.239 kb on + strand, within Dsui_0683at 681.276 kb on - strandat 681.312 kb on - strand, within Dsui_0683at 681.386 kb on + strand, within Dsui_0683at 681.526 kb on + strand, within Dsui_0683at 681.593 kb on + strand, within Dsui_0683at 681.671 kb on - strand, within Dsui_0683at 681.727 kb on + strand, within Dsui_0683at 681.757 kb on - strand, within Dsui_0683at 681.861 kb on - strand, within Dsui_0683at 681.948 kb on - strand, within Dsui_0683at 681.952 kb on + strand, within Dsui_0683at 681.962 kb on + strand, within Dsui_0683at 681.991 kb on + strand, within Dsui_0683at 682.015 kb on - strand, within Dsui_0683at 682.168 kb on - strandat 682.198 kb on - strandat 682.234 kb on - strandat 682.308 kb on + strandat 682.328 kb on - strandat 682.355 kb on - strandat 682.356 kb on + strandat 682.361 kb on - strandat 682.369 kb on + strandat 682.377 kb on - strandat 682.518 kb on + strand, within Dsui_0684at 682.664 kb on + strand, within Dsui_0684at 682.672 kb on - strandat 682.750 kb on - strand, within Dsui_0684at 682.768 kb on + strand, within Dsui_0684at 682.881 kb on + strand, within Dsui_0684at 682.891 kb on + strand, within Dsui_0684at 682.899 kb on - strand, within Dsui_0684at 682.901 kb on + strand, within Dsui_0684at 682.909 kb on - strand, within Dsui_0684at 682.914 kb on - strand, within Dsui_0684at 682.917 kb on + strand, within Dsui_0684at 682.974 kb on + strand, within Dsui_0684at 683.001 kb on - strandat 683.011 kb on + strand, within Dsui_0684at 683.019 kb on - strand, within Dsui_0684at 683.019 kb on - strand, within Dsui_0684at 683.023 kb on + strand, within Dsui_0684at 683.031 kb on - strand, within Dsui_0684at 683.031 kb on - strand, within Dsui_0684at 683.043 kb on + strand, within Dsui_0684at 683.046 kb on - strand, within Dsui_0684at 683.047 kb on + strand, within Dsui_0684at 683.135 kb on + strand, within Dsui_0684

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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679,331 + -2.9
679,339 - -1.8
680,121 - -2.4
680,173 + +0.2
680,181 - +1.0
680,186 - -4.2
680,254 + -0.5
680,257 - -1.4
680,299 + -3.4
680,306 - -1.8
680,338 + -4.1
680,346 - -0.8
680,502 - Dsui_0683 0.11 -0.8
680,525 + Dsui_0683 0.12 -3.5
680,545 - +0.8
680,593 - +0.8
680,642 + Dsui_0683 0.18 -6.5
680,738 + Dsui_0683 0.23 -3.4
680,804 - Dsui_0683 0.26 +0.8
680,816 - Dsui_0683 0.26 -0.2
680,899 - +0.8
680,913 + Dsui_0683 0.31 -3.3
680,913 + Dsui_0683 0.31 -4.3
680,913 + Dsui_0683 0.31 -3.0
680,918 + Dsui_0683 0.32 -4.8
681,007 - Dsui_0683 0.36 -0.8
681,150 + Dsui_0683 0.43 -4.7
681,239 + Dsui_0683 0.48 -2.8
681,276 - +0.8
681,312 - Dsui_0683 0.51 -0.2
681,386 + Dsui_0683 0.55 -3.1
681,526 + Dsui_0683 0.62 -4.5
681,593 + Dsui_0683 0.66 -5.0
681,671 - Dsui_0683 0.69 +0.8
681,727 + Dsui_0683 0.72 -6.8
681,757 - Dsui_0683 0.74 +0.8
681,861 - Dsui_0683 0.79 -0.8
681,948 - Dsui_0683 0.83 +0.8
681,952 + Dsui_0683 0.84 -5.3
681,962 + Dsui_0683 0.84 -5.0
681,991 + Dsui_0683 0.86 -3.1
682,015 - Dsui_0683 0.87 +0.8
682,168 - +0.8
682,198 - +0.8
682,234 - +0.8
682,308 + -1.4
682,328 - -0.2
682,355 - -0.2
682,356 + -0.3
682,361 - -0.2
682,369 + -0.3
682,377 - +0.8
682,518 + Dsui_0684 0.14 +0.1
682,664 + Dsui_0684 0.29 +0.9
682,672 - -0.2
682,750 - Dsui_0684 0.38 +0.8
682,768 + Dsui_0684 0.40 +0.3
682,881 + Dsui_0684 0.52 +0.4
682,891 + Dsui_0684 0.53 -0.0
682,899 - Dsui_0684 0.54 -0.8
682,901 + Dsui_0684 0.54 +0.2
682,909 - Dsui_0684 0.55 -0.2
682,914 - Dsui_0684 0.55 +0.8
682,917 + Dsui_0684 0.56 -0.3
682,974 + Dsui_0684 0.62 +1.1
683,001 - +0.8
683,011 + Dsui_0684 0.65 +0.6
683,019 - Dsui_0684 0.66 -1.2
683,019 - Dsui_0684 0.66 -2.4
683,023 + Dsui_0684 0.67 +0.9
683,031 - Dsui_0684 0.68 -1.2
683,031 - Dsui_0684 0.68 -0.2
683,043 + Dsui_0684 0.69 +0.1
683,046 - Dsui_0684 0.69 -3.0
683,047 + Dsui_0684 0.69 +0.1
683,135 + Dsui_0684 0.78 +0.7

Or see this region's nucleotide sequence