Strain Fitness in Dechlorosoma suillum PS around Dsui_0643

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0642 and Dsui_0643 are separated by 236 nucleotidesDsui_0643 and Dsui_0644 are separated by 107 nucleotides Dsui_0642: Dsui_0642 - adenosylhomocysteinase, at 634,267 to 635,667 _0642 Dsui_0643: Dsui_0643 - HD-GYP domain-containing protein, at 635,904 to 637,133 _0643 Dsui_0644: Dsui_0644 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 637,241 to 638,917 _0644 Position (kb) 635 636 637 638Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 635.833 kb on + strandat 635.833 kb on + strandat 635.901 kb on + strandat 635.902 kb on + strandat 635.990 kb on + strandat 635.998 kb on - strandat 636.003 kb on - strandat 636.025 kb on + strandat 636.055 kb on + strand, within Dsui_0643at 636.063 kb on - strand, within Dsui_0643at 636.064 kb on - strand, within Dsui_0643at 636.100 kb on - strand, within Dsui_0643at 636.103 kb on + strand, within Dsui_0643at 636.171 kb on + strand, within Dsui_0643at 636.243 kb on - strand, within Dsui_0643at 636.247 kb on - strand, within Dsui_0643at 636.311 kb on - strand, within Dsui_0643at 636.331 kb on + strand, within Dsui_0643at 636.430 kb on + strand, within Dsui_0643at 636.457 kb on - strand, within Dsui_0643at 636.523 kb on - strand, within Dsui_0643at 636.623 kb on + strandat 636.743 kb on - strand, within Dsui_0643at 636.748 kb on + strand, within Dsui_0643at 636.844 kb on + strand, within Dsui_0643at 636.844 kb on + strand, within Dsui_0643at 636.860 kb on + strand, within Dsui_0643at 636.862 kb on - strand, within Dsui_0643at 636.958 kb on + strand, within Dsui_0643at 637.024 kb on - strandat 637.080 kb on - strandat 637.080 kb on - strandat 637.104 kb on + strandat 637.138 kb on - strandat 637.142 kb on + strandat 637.183 kb on - strandat 637.218 kb on + strandat 637.226 kb on - strandat 637.239 kb on + strandat 637.239 kb on + strandat 637.247 kb on - strandat 637.252 kb on - strandat 637.316 kb on + strandat 637.316 kb on + strandat 637.324 kb on - strandat 637.324 kb on - strandat 637.324 kb on - strandat 637.374 kb on - strandat 637.454 kb on + strand, within Dsui_0644at 637.572 kb on + strand, within Dsui_0644at 637.580 kb on - strand, within Dsui_0644at 637.580 kb on - strand, within Dsui_0644at 637.656 kb on + strand, within Dsui_0644at 637.662 kb on + strand, within Dsui_0644at 637.662 kb on + strand, within Dsui_0644at 637.662 kb on + strand, within Dsui_0644at 637.708 kb on - strand, within Dsui_0644at 637.808 kb on + strand, within Dsui_0644at 637.899 kb on - strand, within Dsui_0644at 637.965 kb on + strand, within Dsui_0644at 637.973 kb on - strand, within Dsui_0644at 637.978 kb on - strand, within Dsui_0644at 638.019 kb on - strand, within Dsui_0644at 638.036 kb on + strand, within Dsui_0644at 638.037 kb on - strand, within Dsui_0644at 638.128 kb on + strand, within Dsui_0644at 638.133 kb on + strand, within Dsui_0644

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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635,833 + -0.8
635,833 + -0.2
635,901 + +0.8
635,902 + +0.8
635,990 + +0.8
635,998 - -0.1
636,003 - +1.9
636,025 + +0.8
636,055 + Dsui_0643 0.12 +0.8
636,063 - Dsui_0643 0.13 -3.2
636,064 - Dsui_0643 0.13 -1.7
636,100 - Dsui_0643 0.16 -1.0
636,103 + Dsui_0643 0.16 +0.8
636,171 + Dsui_0643 0.22 +0.8
636,243 - Dsui_0643 0.28 -3.5
636,247 - Dsui_0643 0.28 -4.4
636,311 - Dsui_0643 0.33 -3.1
636,331 + Dsui_0643 0.35 +0.8
636,430 + Dsui_0643 0.43 -0.2
636,457 - Dsui_0643 0.45 -3.7
636,523 - Dsui_0643 0.50 -0.8
636,623 + +0.8
636,743 - Dsui_0643 0.68 -2.0
636,748 + Dsui_0643 0.69 -1.5
636,844 + Dsui_0643 0.76 -0.8
636,844 + Dsui_0643 0.76 +0.8
636,860 + Dsui_0643 0.78 -1.2
636,862 - Dsui_0643 0.78 -2.9
636,958 + Dsui_0643 0.86 -0.2
637,024 - -1.8
637,080 - -2.5
637,080 - -1.5
637,104 + +0.8
637,138 - +0.8
637,142 + -0.2
637,183 - +0.8
637,218 + +0.8
637,226 - -1.8
637,239 + +0.8
637,239 + -0.8
637,247 - +0.8
637,252 - +0.8
637,316 + -0.2
637,316 + +0.8
637,324 - -0.8
637,324 - +0.8
637,324 - -1.6
637,374 - -0.2
637,454 + Dsui_0644 0.13 +0.8
637,572 + Dsui_0644 0.20 -0.8
637,580 - Dsui_0644 0.20 -0.2
637,580 - Dsui_0644 0.20 +0.8
637,656 + Dsui_0644 0.25 -2.4
637,662 + Dsui_0644 0.25 -0.2
637,662 + Dsui_0644 0.25 -0.2
637,662 + Dsui_0644 0.25 +0.8
637,708 - Dsui_0644 0.28 -1.8
637,808 + Dsui_0644 0.34 +0.8
637,899 - Dsui_0644 0.39 +0.8
637,965 + Dsui_0644 0.43 -0.2
637,973 - Dsui_0644 0.44 -0.2
637,978 - Dsui_0644 0.44 -2.7
638,019 - Dsui_0644 0.46 -2.0
638,036 + Dsui_0644 0.47 +0.8
638,037 - Dsui_0644 0.47 -2.4
638,128 + Dsui_0644 0.53 +0.8
638,133 + Dsui_0644 0.53 -2.0

Or see this region's nucleotide sequence