Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0628 and Dsui_0629 overlap by 4 nucleotides Dsui_0629 and Dsui_0630 are separated by 72 nucleotides
Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515
_0628
Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435
_0629
Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812
_0630
Position (kb)
622
623
624 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 621.617 kb on + strand, within Dsui_0628 at 621.617 kb on + strand, within Dsui_0628 at 621.639 kb on - strand, within Dsui_0628 at 621.689 kb on + strand, within Dsui_0628 at 621.828 kb on + strand, within Dsui_0628 at 621.858 kb on + strand, within Dsui_0628 at 622.029 kb on + strand, within Dsui_0628 at 622.166 kb on + strand, within Dsui_0628 at 622.261 kb on + strand at 622.278 kb on + strand, within Dsui_0628 at 622.301 kb on - strand, within Dsui_0628 at 622.413 kb on + strand at 622.501 kb on - strand at 622.510 kb on + strand at 622.510 kb on + strand at 622.511 kb on - strand at 622.595 kb on + strand at 622.676 kb on - strand, within Dsui_0629 at 622.857 kb on + strand, within Dsui_0629 at 622.880 kb on - strand, within Dsui_0629 at 622.920 kb on + strand, within Dsui_0629 at 622.928 kb on - strand, within Dsui_0629 at 623.013 kb on + strand, within Dsui_0629 at 623.057 kb on + strand, within Dsui_0629 at 623.132 kb on - strand at 623.280 kb on + strand, within Dsui_0629 at 623.285 kb on + strand, within Dsui_0629 at 623.344 kb on - strand at 623.372 kb on - strand at 623.396 kb on + strand at 623.396 kb on + strand at 623.644 kb on + strand, within Dsui_0630 at 623.659 kb on + strand, within Dsui_0630 at 623.785 kb on + strand, within Dsui_0630 at 623.785 kb on + strand, within Dsui_0630 at 623.948 kb on - strand, within Dsui_0630 at 623.948 kb on - strand, within Dsui_0630 at 624.004 kb on + strand, within Dsui_0630 at 624.124 kb on + strand at 624.124 kb on + strand, within Dsui_0630 at 624.170 kb on + strand, within Dsui_0630 at 624.178 kb on - strand, within Dsui_0630 at 624.223 kb on - strand, within Dsui_0630 at 624.290 kb on - strand, within Dsui_0630 at 624.295 kb on + strand, within Dsui_0630 at 624.355 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 621,617 + Dsui_0628 0.17 -0.2 621,617 + Dsui_0628 0.17 +0.8 621,639 - Dsui_0628 0.19 -1.6 621,689 + Dsui_0628 0.23 -2.9 621,828 + Dsui_0628 0.36 +0.8 621,858 + Dsui_0628 0.39 +0.8 622,029 + Dsui_0628 0.55 -1.2 622,166 + Dsui_0628 0.68 -1.5 622,261 + +0.8 622,278 + Dsui_0628 0.78 +0.8 622,301 - Dsui_0628 0.80 -0.3 622,413 + +0.8 622,501 - -2.1 622,510 + +0.8 622,510 + +0.8 622,511 - -1.5 622,595 + +0.8 622,676 - Dsui_0629 0.18 +0.2 622,857 + Dsui_0629 0.37 -0.8 622,880 - Dsui_0629 0.40 -2.0 622,920 + Dsui_0629 0.44 -1.8 622,928 - Dsui_0629 0.45 -0.6 623,013 + Dsui_0629 0.54 -0.2 623,057 + Dsui_0629 0.59 -0.2 623,132 - +1.8 623,280 + Dsui_0629 0.83 -3.0 623,285 + Dsui_0629 0.84 -1.5 623,344 - -0.7 623,372 - -0.4 623,396 + -3.3 623,396 + +0.5 623,644 + Dsui_0630 0.10 -1.2 623,659 + Dsui_0630 0.12 +0.8 623,785 + Dsui_0630 0.21 -2.2 623,785 + Dsui_0630 0.21 -1.2 623,948 - Dsui_0630 0.34 -1.0 623,948 - Dsui_0630 0.34 -1.2 624,004 + Dsui_0630 0.38 -0.8 624,124 + +0.8 624,124 + Dsui_0630 0.47 +0.8 624,170 + Dsui_0630 0.51 +0.8 624,178 - Dsui_0630 0.51 -0.4 624,223 - Dsui_0630 0.55 -1.1 624,290 - Dsui_0630 0.60 -0.5 624,295 + Dsui_0630 0.60 -0.2 624,355 + +0.8
Or see this region's nucleotide sequence