Strain Fitness in Dechlorosoma suillum PS around Dsui_0609

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0607 and Dsui_0608 overlap by 7 nucleotidesDsui_0608 and Dsui_0609 are separated by 50 nucleotidesDsui_0609 and Dsui_0610 are separated by 21 nucleotides Dsui_0607: Dsui_0607 - putative membrane protein, at 602,443 to 602,859 _0607 Dsui_0608: Dsui_0608 - nucleoside-diphosphate-sugar epimerase, at 602,853 to 603,758 _0608 Dsui_0609: Dsui_0609 - 2-polyprenylphenol hydroxylase-like oxidoreductase, at 603,809 to 604,822 _0609 Dsui_0610: Dsui_0610 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 604,844 to 606,016 _0610 Position (kb) 603 604 605Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 602.894 kb on + strandat 602.905 kb on + strandat 603.018 kb on + strandat 603.041 kb on + strand, within Dsui_0608at 603.207 kb on - strand, within Dsui_0608at 603.207 kb on - strand, within Dsui_0608at 603.288 kb on - strand, within Dsui_0608at 603.394 kb on + strandat 603.394 kb on + strand, within Dsui_0608at 603.417 kb on - strand, within Dsui_0608at 603.435 kb on + strandat 603.436 kb on - strand, within Dsui_0608at 603.454 kb on - strand, within Dsui_0608at 603.454 kb on - strand, within Dsui_0608at 603.481 kb on + strand, within Dsui_0608at 603.494 kb on - strand, within Dsui_0608at 603.560 kb on - strand, within Dsui_0608at 603.571 kb on - strand, within Dsui_0608at 603.710 kb on + strandat 603.715 kb on + strandat 603.841 kb on + strandat 603.891 kb on + strandat 603.896 kb on + strandat 603.896 kb on + strandat 604.048 kb on + strand, within Dsui_0609at 604.048 kb on + strand, within Dsui_0609at 604.056 kb on - strand, within Dsui_0609at 604.056 kb on - strandat 604.056 kb on - strand, within Dsui_0609at 604.066 kb on - strand, within Dsui_0609at 604.105 kb on + strand, within Dsui_0609at 604.113 kb on - strand, within Dsui_0609at 604.305 kb on + strand, within Dsui_0609at 604.383 kb on - strand, within Dsui_0609at 604.393 kb on - strand, within Dsui_0609at 604.403 kb on - strand, within Dsui_0609at 604.420 kb on - strand, within Dsui_0609at 604.433 kb on - strand, within Dsui_0609at 604.501 kb on - strand, within Dsui_0609at 604.515 kb on - strand, within Dsui_0609at 604.708 kb on + strand, within Dsui_0609at 604.735 kb on + strandat 604.873 kb on + strandat 604.913 kb on - strandat 605.000 kb on + strand, within Dsui_0610at 605.147 kb on + strand, within Dsui_0610at 605.155 kb on - strand, within Dsui_0610at 605.186 kb on + strand, within Dsui_0610at 605.194 kb on - strand, within Dsui_0610at 605.220 kb on + strand, within Dsui_0610at 605.228 kb on - strand, within Dsui_0610at 605.235 kb on + strand, within Dsui_0610at 605.243 kb on - strand, within Dsui_0610at 605.415 kb on + strand, within Dsui_0610at 605.427 kb on + strand, within Dsui_0610at 605.650 kb on + strand, within Dsui_0610at 605.691 kb on - strand, within Dsui_0610at 605.771 kb on - strand, within Dsui_0610at 605.778 kb on + strand, within Dsui_0610at 605.786 kb on - strand, within Dsui_0610at 605.796 kb on + strand, within Dsui_0610

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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602,894 + -0.2
602,905 + -0.2
603,018 + +0.8
603,041 + Dsui_0608 0.21 -0.8
603,207 - Dsui_0608 0.39 +0.1
603,207 - Dsui_0608 0.39 -0.3
603,288 - Dsui_0608 0.48 +0.0
603,394 + +0.8
603,394 + Dsui_0608 0.60 +0.8
603,417 - Dsui_0608 0.62 +0.5
603,435 + -0.2
603,436 - Dsui_0608 0.64 -0.3
603,454 - Dsui_0608 0.66 +0.0
603,454 - Dsui_0608 0.66 -0.4
603,481 + Dsui_0608 0.69 -0.0
603,494 - Dsui_0608 0.71 -1.0
603,560 - Dsui_0608 0.78 -0.2
603,571 - Dsui_0608 0.79 +0.3
603,710 + -0.1
603,715 + +0.3
603,841 + -2.7
603,891 + -2.7
603,896 + -2.6
603,896 + -3.3
604,048 + Dsui_0609 0.24 -2.1
604,048 + Dsui_0609 0.24 -4.0
604,056 - Dsui_0609 0.24 +0.8
604,056 - +0.8
604,056 - Dsui_0609 0.24 +0.8
604,066 - Dsui_0609 0.25 -1.6
604,105 + Dsui_0609 0.29 -2.1
604,113 - Dsui_0609 0.30 -0.2
604,305 + Dsui_0609 0.49 -2.6
604,383 - Dsui_0609 0.57 -1.8
604,393 - Dsui_0609 0.58 -0.2
604,403 - Dsui_0609 0.59 +0.8
604,420 - Dsui_0609 0.60 -0.2
604,433 - Dsui_0609 0.62 -2.6
604,501 - Dsui_0609 0.68 -2.0
604,515 - Dsui_0609 0.70 -1.2
604,708 + Dsui_0609 0.89 -1.6
604,735 + -7.1
604,873 + -1.1
604,913 - -1.2
605,000 + Dsui_0610 0.13 -1.6
605,147 + Dsui_0610 0.26 -0.9
605,155 - Dsui_0610 0.27 -0.2
605,186 + Dsui_0610 0.29 -0.3
605,194 - Dsui_0610 0.30 +0.8
605,220 + Dsui_0610 0.32 -1.1
605,228 - Dsui_0610 0.33 -2.7
605,235 + Dsui_0610 0.33 -2.0
605,243 - Dsui_0610 0.34 -0.8
605,415 + Dsui_0610 0.49 -0.3
605,427 + Dsui_0610 0.50 +0.9
605,650 + Dsui_0610 0.69 -1.3
605,691 - Dsui_0610 0.72 +0.8
605,771 - Dsui_0610 0.79 +0.8
605,778 + Dsui_0610 0.80 -0.8
605,786 - Dsui_0610 0.80 +0.8
605,796 + Dsui_0610 0.81 -2.1

Or see this region's nucleotide sequence