Strain Fitness in Dechlorosoma suillum PS around Dsui_0505

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0503 and Dsui_0504 overlap by 4 nucleotidesDsui_0504 and Dsui_0505 are separated by 55 nucleotidesDsui_0505 and Dsui_0506 are separated by 51 nucleotides Dsui_0503: Dsui_0503 - Mg-dependent DNase, at 505,613 to 506,473 _0503 Dsui_0504: Dsui_0504 - putative membrane protein, at 506,470 to 507,375 _0504 Dsui_0505: Dsui_0505 - 7-cyano-7-deazaguanine reductase, at 507,431 to 508,264 _0505 Dsui_0506: Dsui_0506 - diguanylate cyclase (GGDEF) domain-containing protein, at 508,316 to 510,517 _0506 Position (kb) 507 508 509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 506.456 kb on - strandat 506.530 kb on - strandat 506.618 kb on - strandat 506.618 kb on - strand, within Dsui_0504at 506.636 kb on + strand, within Dsui_0504at 506.644 kb on - strand, within Dsui_0504at 506.655 kb on + strand, within Dsui_0504at 506.713 kb on - strandat 506.713 kb on - strandat 506.746 kb on - strand, within Dsui_0504at 506.826 kb on - strand, within Dsui_0504at 506.964 kb on + strand, within Dsui_0504at 506.972 kb on - strand, within Dsui_0504at 507.005 kb on + strand, within Dsui_0504at 507.038 kb on + strand, within Dsui_0504at 507.084 kb on - strand, within Dsui_0504at 507.150 kb on + strand, within Dsui_0504at 507.176 kb on - strand, within Dsui_0504at 507.221 kb on + strand, within Dsui_0504at 507.254 kb on - strandat 507.351 kb on + strandat 507.352 kb on + strandat 507.357 kb on + strandat 507.365 kb on - strandat 507.369 kb on + strandat 507.369 kb on + strandat 507.503 kb on - strandat 507.622 kb on + strand, within Dsui_0505at 507.622 kb on + strand, within Dsui_0505at 507.640 kb on - strandat 507.669 kb on + strand, within Dsui_0505at 507.669 kb on + strand, within Dsui_0505at 507.677 kb on - strand, within Dsui_0505at 507.693 kb on + strand, within Dsui_0505at 507.706 kb on + strand, within Dsui_0505at 507.714 kb on + strand, within Dsui_0505at 507.721 kb on + strand, within Dsui_0505at 507.728 kb on + strand, within Dsui_0505at 507.871 kb on - strandat 507.967 kb on + strand, within Dsui_0505at 508.034 kb on - strand, within Dsui_0505at 508.037 kb on + strand, within Dsui_0505at 508.105 kb on + strand, within Dsui_0505at 508.148 kb on + strand, within Dsui_0505at 508.153 kb on + strand, within Dsui_0505at 508.161 kb on - strand, within Dsui_0505at 508.442 kb on - strandat 508.457 kb on + strandat 508.465 kb on - strandat 508.488 kb on - strandat 508.552 kb on + strand, within Dsui_0506at 508.559 kb on - strand, within Dsui_0506at 508.577 kb on - strand, within Dsui_0506at 508.599 kb on - strand, within Dsui_0506at 508.635 kb on + strand, within Dsui_0506at 508.649 kb on + strand, within Dsui_0506at 508.649 kb on + strand, within Dsui_0506at 508.657 kb on - strand, within Dsui_0506at 508.757 kb on - strand, within Dsui_0506at 508.895 kb on + strand, within Dsui_0506at 508.978 kb on - strand, within Dsui_0506at 508.993 kb on + strandat 508.993 kb on + strand, within Dsui_0506at 508.993 kb on + strand, within Dsui_0506at 508.993 kb on + strand, within Dsui_0506at 508.993 kb on + strand, within Dsui_0506at 509.065 kb on + strand, within Dsui_0506at 509.159 kb on - strand, within Dsui_0506at 509.238 kb on + strand, within Dsui_0506at 509.238 kb on + strand, within Dsui_0506at 509.246 kb on - strand, within Dsui_0506

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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506,456 - -2.0
506,530 - +0.8
506,618 - +0.8
506,618 - Dsui_0504 0.16 +0.8
506,636 + Dsui_0504 0.18 +0.8
506,644 - Dsui_0504 0.19 -1.8
506,655 + Dsui_0504 0.20 -0.2
506,713 - +0.8
506,713 - +0.8
506,746 - Dsui_0504 0.30 -0.2
506,826 - Dsui_0504 0.39 -1.2
506,964 + Dsui_0504 0.55 -1.8
506,972 - Dsui_0504 0.55 +0.8
507,005 + Dsui_0504 0.59 -1.5
507,038 + Dsui_0504 0.63 -3.2
507,084 - Dsui_0504 0.68 -2.2
507,150 + Dsui_0504 0.75 -2.9
507,176 - Dsui_0504 0.78 +0.8
507,221 + Dsui_0504 0.83 -0.8
507,254 - +0.8
507,351 + -3.8
507,352 + -2.3
507,357 + -1.4
507,365 - -2.2
507,369 + -4.0
507,369 + +0.5
507,503 - +0.8
507,622 + Dsui_0505 0.23 -1.8
507,622 + Dsui_0505 0.23 -2.3
507,640 - +0.8
507,669 + Dsui_0505 0.29 -3.4
507,669 + Dsui_0505 0.29 -1.9
507,677 - Dsui_0505 0.29 -0.2
507,693 + Dsui_0505 0.31 -1.2
507,706 + Dsui_0505 0.33 -1.5
507,714 + Dsui_0505 0.34 -2.2
507,721 + Dsui_0505 0.35 -1.2
507,728 + Dsui_0505 0.36 -1.2
507,871 - +0.8
507,967 + Dsui_0505 0.64 -1.8
508,034 - Dsui_0505 0.72 -0.8
508,037 + Dsui_0505 0.73 -0.2
508,105 + Dsui_0505 0.81 -3.2
508,148 + Dsui_0505 0.86 -3.3
508,153 + Dsui_0505 0.87 -3.8
508,161 - Dsui_0505 0.88 +0.8
508,442 - -2.9
508,457 + -4.6
508,465 - -2.5
508,488 - -2.9
508,552 + Dsui_0506 0.11 +0.2
508,559 - Dsui_0506 0.11 -2.6
508,577 - Dsui_0506 0.12 -1.8
508,599 - Dsui_0506 0.13 -0.5
508,635 + Dsui_0506 0.14 -1.2
508,649 + Dsui_0506 0.15 +3.3
508,649 + Dsui_0506 0.15 -1.2
508,657 - Dsui_0506 0.15 -2.2
508,757 - Dsui_0506 0.20 -2.2
508,895 + Dsui_0506 0.26 -0.2
508,978 - Dsui_0506 0.30 -0.9
508,993 + +0.8
508,993 + Dsui_0506 0.31 -0.8
508,993 + Dsui_0506 0.31 -1.5
508,993 + Dsui_0506 0.31 -0.8
508,993 + Dsui_0506 0.31 +0.8
509,065 + Dsui_0506 0.34 +0.8
509,159 - Dsui_0506 0.38 -2.5
509,238 + Dsui_0506 0.42 -2.2
509,238 + Dsui_0506 0.42 +0.8
509,246 - Dsui_0506 0.42 -2.0

Or see this region's nucleotide sequence