Strain Fitness in Dechlorosoma suillum PS around Dsui_0497

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0496 and Dsui_0497 are separated by 137 nucleotidesDsui_0497 and Dsui_0498 are separated by 16 nucleotidesDsui_0498 and Dsui_0499 are separated by 27 nucleotidesDsui_0499 and Dsui_0500 are separated by 31 nucleotides Dsui_0496: Dsui_0496 - serine/threonine protein kinase, at 498,393 to 499,358 _0496 Dsui_0497: Dsui_0497 - TIGR00255 family protein, at 499,496 to 500,362 _0497 Dsui_0498: Dsui_0498 - guanylate kinase, at 500,379 to 500,987 _0498 Dsui_0499: Dsui_0499 - DNA-directed RNA polymerase, omega subunit, at 501,015 to 501,221 _0499 Dsui_0500: Dsui_0500 - (p)ppGpp synthetase, RelA/SpoT family, at 501,253 to 503,484 _0500 Position (kb) 499 500 501Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 498.766 kb on + strand, within Dsui_0496at 498.779 kb on - strand, within Dsui_0496at 498.786 kb on - strand, within Dsui_0496at 499.036 kb on + strand, within Dsui_0496at 499.108 kb on - strand, within Dsui_0496at 499.189 kb on - strand, within Dsui_0496at 499.204 kb on - strand, within Dsui_0496at 499.222 kb on - strand, within Dsui_0496at 499.338 kb on - strandat 499.401 kb on + strandat 499.514 kb on - strandat 499.557 kb on + strandat 499.562 kb on + strandat 499.572 kb on + strandat 499.789 kb on - strand, within Dsui_0497at 499.800 kb on - strand, within Dsui_0497at 499.823 kb on + strand, within Dsui_0497at 499.824 kb on - strand, within Dsui_0497at 499.896 kb on + strand, within Dsui_0497at 499.904 kb on - strand, within Dsui_0497at 500.026 kb on + strand, within Dsui_0497at 500.049 kb on + strand, within Dsui_0497at 500.077 kb on + strand, within Dsui_0497at 500.147 kb on + strand, within Dsui_0497at 500.164 kb on + strand, within Dsui_0497at 500.287 kb on - strandat 500.293 kb on + strandat 501.006 kb on + strandat 501.035 kb on + strandat 501.040 kb on + strand, within Dsui_0499at 501.134 kb on - strand, within Dsui_0499at 501.215 kb on + strandat 501.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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498,766 + Dsui_0496 0.39 +0.8
498,779 - Dsui_0496 0.40 -0.1
498,786 - Dsui_0496 0.41 -1.0
499,036 + Dsui_0496 0.67 -1.5
499,108 - Dsui_0496 0.74 -1.4
499,189 - Dsui_0496 0.82 -0.9
499,204 - Dsui_0496 0.84 -0.7
499,222 - Dsui_0496 0.86 -0.8
499,338 - -1.3
499,401 + -3.3
499,514 - +0.8
499,557 + -3.9
499,562 + -1.9
499,572 + -3.6
499,789 - Dsui_0497 0.34 -0.2
499,800 - Dsui_0497 0.35 +0.8
499,823 + Dsui_0497 0.38 -2.2
499,824 - Dsui_0497 0.38 -2.2
499,896 + Dsui_0497 0.46 -5.5
499,904 - Dsui_0497 0.47 -1.5
500,026 + Dsui_0497 0.61 -3.7
500,049 + Dsui_0497 0.64 -2.1
500,077 + Dsui_0497 0.67 -3.3
500,147 + Dsui_0497 0.75 -2.9
500,164 + Dsui_0497 0.77 -2.8
500,287 - -1.2
500,293 + -2.7
501,006 + +1.4
501,035 + +2.3
501,040 + Dsui_0499 0.12 +1.6
501,134 - Dsui_0499 0.57 -0.8
501,215 + +1.8
501,230 - -1.2

Or see this region's nucleotide sequence