Strain Fitness in Dechlorosoma suillum PS around Dsui_0494

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0492 and Dsui_0493 are separated by 5 nucleotidesDsui_0493 and Dsui_0494 are separated by 13 nucleotidesDsui_0494 and Dsui_0495 are separated by 9 nucleotidesDsui_0495 and Dsui_0496 overlap by 4 nucleotides Dsui_0492: Dsui_0492 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 495,241 to 495,831 _0492 Dsui_0493: Dsui_0493 - hypothetical protein, at 495,837 to 496,745 _0493 Dsui_0494: Dsui_0494 - ribonuclease PH, at 496,759 to 497,475 _0494 Dsui_0495: Dsui_0495 - serine/threonine protein phosphatase, at 497,485 to 498,396 _0495 Dsui_0496: Dsui_0496 - serine/threonine protein kinase, at 498,393 to 499,358 _0496 Position (kb) 496 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1at 495.765 kb on - strand, within Dsui_0492at 495.772 kb on - strand, within Dsui_0492at 495.772 kb on - strand, within Dsui_0492at 495.775 kb on + strandat 495.808 kb on - strandat 495.828 kb on + strandat 495.833 kb on + strandat 495.833 kb on + strandat 495.833 kb on + strandat 495.841 kb on - strandat 495.841 kb on - strandat 496.081 kb on - strand, within Dsui_0493at 496.255 kb on + strand, within Dsui_0493at 496.277 kb on + strand, within Dsui_0493at 496.526 kb on - strand, within Dsui_0493at 496.639 kb on + strand, within Dsui_0493at 496.647 kb on - strand, within Dsui_0493at 496.668 kb on - strandat 496.878 kb on - strand, within Dsui_0494at 497.152 kb on + strand, within Dsui_0494at 497.159 kb on - strand, within Dsui_0494at 497.244 kb on - strand, within Dsui_0494at 497.270 kb on + strand, within Dsui_0494at 497.305 kb on + strand, within Dsui_0494at 497.357 kb on + strand, within Dsui_0494at 497.357 kb on + strand, within Dsui_0494at 497.359 kb on + strand, within Dsui_0494at 497.359 kb on + strand, within Dsui_0494at 497.365 kb on - strand, within Dsui_0494at 497.365 kb on - strand, within Dsui_0494at 497.392 kb on + strand, within Dsui_0494at 497.567 kb on + strandat 497.662 kb on - strand, within Dsui_0495at 497.662 kb on - strand, within Dsui_0495at 497.759 kb on - strand, within Dsui_0495at 497.773 kb on - strand, within Dsui_0495at 497.819 kb on - strand, within Dsui_0495at 497.837 kb on + strand, within Dsui_0495at 497.910 kb on - strand, within Dsui_0495at 497.910 kb on - strand, within Dsui_0495at 497.911 kb on - strand, within Dsui_0495at 498.033 kb on - strand, within Dsui_0495at 498.126 kb on + strand, within Dsui_0495at 498.134 kb on - strand, within Dsui_0495at 498.141 kb on + strand, within Dsui_0495at 498.144 kb on - strand, within Dsui_0495at 498.161 kb on + strand, within Dsui_0495at 498.168 kb on - strand, within Dsui_0495at 498.168 kb on - strand, within Dsui_0495at 498.417 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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495,765 - Dsui_0492 0.89 -1.4
495,772 - Dsui_0492 0.90 -0.6
495,772 - Dsui_0492 0.90 -0.2
495,775 + +0.8
495,808 - -1.9
495,828 + -0.8
495,833 + -1.8
495,833 + -0.2
495,833 + -1.5
495,841 - +0.8
495,841 - -0.9
496,081 - Dsui_0493 0.27 -1.0
496,255 + Dsui_0493 0.46 +0.1
496,277 + Dsui_0493 0.48 -0.8
496,526 - Dsui_0493 0.76 -0.3
496,639 + Dsui_0493 0.88 -0.2
496,647 - Dsui_0493 0.89 -0.7
496,668 - -0.5
496,878 - Dsui_0494 0.17 -0.4
497,152 + Dsui_0494 0.55 -0.2
497,159 - Dsui_0494 0.56 -1.3
497,244 - Dsui_0494 0.68 -1.5
497,270 + Dsui_0494 0.71 +0.8
497,305 + Dsui_0494 0.76 -0.2
497,357 + Dsui_0494 0.83 +0.8
497,357 + Dsui_0494 0.83 -0.5
497,359 + Dsui_0494 0.84 -0.2
497,359 + Dsui_0494 0.84 -0.8
497,365 - Dsui_0494 0.85 -3.0
497,365 - Dsui_0494 0.85 -1.5
497,392 + Dsui_0494 0.88 -0.8
497,567 + -2.0
497,662 - Dsui_0495 0.19 -0.7
497,662 - Dsui_0495 0.19 -0.9
497,759 - Dsui_0495 0.30 +0.0
497,773 - Dsui_0495 0.32 -0.6
497,819 - Dsui_0495 0.37 -0.1
497,837 + Dsui_0495 0.39 +0.8
497,910 - Dsui_0495 0.47 -0.2
497,910 - Dsui_0495 0.47 -0.5
497,911 - Dsui_0495 0.47 -0.4
498,033 - Dsui_0495 0.60 -0.6
498,126 + Dsui_0495 0.70 +0.8
498,134 - Dsui_0495 0.71 -0.5
498,141 + Dsui_0495 0.72 -0.2
498,144 - Dsui_0495 0.72 -0.7
498,161 + Dsui_0495 0.74 -0.2
498,168 - Dsui_0495 0.75 -2.0
498,168 - Dsui_0495 0.75 -0.6
498,417 - -0.8

Or see this region's nucleotide sequence