Strain Fitness in Dechlorosoma suillum PS around Dsui_0429

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0428 and Dsui_0429 are separated by 286 nucleotidesDsui_0429 and Dsui_0430 are separated by 142 nucleotides Dsui_0428: Dsui_0428 - methyl-accepting chemotaxis protein, at 432,673 to 434,526 _0428 Dsui_0429: Dsui_0429 - cystathionine beta-lyase/cystathionine gamma-synthase, at 434,813 to 435,961 _0429 Dsui_0430: Dsui_0430 - ABC-type branched-chain amino acid transport system, periplasmic component, at 436,104 to 437,216 _0430 Position (kb) 434 435 436Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 433.831 kb on - strand, within Dsui_0428at 433.910 kb on + strand, within Dsui_0428at 434.036 kb on - strand, within Dsui_0428at 434.037 kb on - strand, within Dsui_0428at 434.096 kb on + strand, within Dsui_0428at 434.125 kb on + strand, within Dsui_0428at 434.125 kb on + strand, within Dsui_0428at 434.202 kb on + strand, within Dsui_0428at 434.310 kb on + strandat 434.329 kb on - strand, within Dsui_0428at 434.381 kb on - strandat 434.686 kb on + strandat 434.823 kb on + strandat 434.823 kb on + strandat 435.011 kb on - strand, within Dsui_0429at 435.388 kb on + strandat 435.409 kb on - strand, within Dsui_0429at 435.409 kb on - strandat 435.524 kb on + strand, within Dsui_0429at 435.621 kb on - strand, within Dsui_0429at 435.641 kb on - strand, within Dsui_0429at 435.641 kb on - strand, within Dsui_0429at 435.773 kb on + strand, within Dsui_0429at 435.847 kb on - strandat 436.061 kb on - strandat 436.061 kb on - strandat 436.100 kb on - strandat 436.129 kb on + strandat 436.247 kb on + strand, within Dsui_0430at 436.286 kb on + strand, within Dsui_0430at 436.327 kb on + strand, within Dsui_0430at 436.347 kb on - strand, within Dsui_0430at 436.404 kb on + strand, within Dsui_0430at 436.474 kb on - strand, within Dsui_0430at 436.474 kb on - strand, within Dsui_0430at 436.584 kb on + strand, within Dsui_0430at 436.720 kb on - strand, within Dsui_0430at 436.720 kb on - strand, within Dsui_0430at 436.744 kb on - strand, within Dsui_0430at 436.832 kb on + strand, within Dsui_0430at 436.906 kb on - strandat 436.942 kb on - strand, within Dsui_0430

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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433,831 - Dsui_0428 0.62 -4.2
433,910 + Dsui_0428 0.67 -0.7
434,036 - Dsui_0428 0.74 -2.0
434,037 - Dsui_0428 0.74 -2.0
434,096 + Dsui_0428 0.77 -0.2
434,125 + Dsui_0428 0.78 +0.8
434,125 + Dsui_0428 0.78 -2.2
434,202 + Dsui_0428 0.82 -0.2
434,310 + +0.8
434,329 - Dsui_0428 0.89 -3.2
434,381 - -4.3
434,686 + -0.2
434,823 + +0.8
434,823 + +0.8
435,011 - Dsui_0429 0.17 -1.7
435,388 + +0.8
435,409 - Dsui_0429 0.52 -1.5
435,409 - +0.8
435,524 + Dsui_0429 0.62 -0.2
435,621 - Dsui_0429 0.70 +0.8
435,641 - Dsui_0429 0.72 +0.8
435,641 - Dsui_0429 0.72 -1.6
435,773 + Dsui_0429 0.84 -0.7
435,847 - +0.8
436,061 - -1.7
436,061 - +0.8
436,100 - +0.8
436,129 + -3.6
436,247 + Dsui_0430 0.13 -0.8
436,286 + Dsui_0430 0.16 -1.5
436,327 + Dsui_0430 0.20 -3.5
436,347 - Dsui_0430 0.22 +0.8
436,404 + Dsui_0430 0.27 -1.9
436,474 - Dsui_0430 0.33 -0.7
436,474 - Dsui_0430 0.33 -1.2
436,584 + Dsui_0430 0.43 -2.7
436,720 - Dsui_0430 0.55 -0.2
436,720 - Dsui_0430 0.55 -0.7
436,744 - Dsui_0430 0.58 -0.2
436,832 + Dsui_0430 0.65 -1.5
436,906 - +0.8
436,942 - Dsui_0430 0.75 -1.7

Or see this region's nucleotide sequence