Strain Fitness in Dechlorosoma suillum PS around Dsui_0374

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0371 and Dsui_0372 overlap by 4 nucleotidesDsui_0372 and Dsui_0373 are separated by 20 nucleotidesDsui_0373 and Dsui_0374 are separated by 61 nucleotidesDsui_0374 and Dsui_0375 are separated by 49 nucleotidesDsui_0375 and Dsui_0376 are separated by 26 nucleotidesDsui_0376 and Dsui_0377 are separated by 64 nucleotidesDsui_0377 and Dsui_0378 are separated by 172 nucleotides Dsui_0371: Dsui_0371 - transcription termination/antitermination factor NusG, at 371,566 to 372,099 _0371 Dsui_0372: Dsui_0372 - preprotein translocase, SecE subunit, at 372,096 to 372,449 _0372 Dsui_0373: Dsui_0373 - tRNA-Trp, at 372,470 to 372,545 _0373 Dsui_0374: Dsui_0374 - translation elongation factor TU, at 372,607 to 373,797 _0374 Dsui_0375: Dsui_0375 - tRNA-Thr, at 373,847 to 373,921 _0375 Dsui_0376: Dsui_0376 - tRNA-Gly, at 373,948 to 374,021 _0376 Dsui_0377: Dsui_0377 - tRNA-Tyr, at 374,086 to 374,170 _0377 Dsui_0378: Dsui_0378 - FAD/FMN-dependent dehydrogenase, at 374,343 to 375,740 _0378 Position (kb) 372 373 374Strain fitness (log2 ratio) -2 -1 0 1at 374.217 kb on - strandat 374.312 kb on - strandat 374.327 kb on + strandat 374.340 kb on + strandat 374.378 kb on + strandat 374.378 kb on + strandat 374.378 kb on + strandat 374.386 kb on - strandat 374.386 kb on - strandat 374.477 kb on + strandat 374.589 kb on + strand, within Dsui_0378at 374.597 kb on - strand, within Dsui_0378

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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374,217 - -0.2
374,312 - -1.5
374,327 + +0.8
374,340 + -1.5
374,378 + -0.2
374,378 + -2.0
374,378 + -0.2
374,386 - +0.8
374,386 - +0.8
374,477 + -1.5
374,589 + Dsui_0378 0.18 -1.6
374,597 - Dsui_0378 0.18 -0.8

Or see this region's nucleotide sequence