Strain Fitness in Dechlorosoma suillum PS around Dsui_0324

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0323 and Dsui_0324 are separated by 9 nucleotidesDsui_0324 and Dsui_0325 are separated by 7 nucleotides Dsui_0323: Dsui_0323 - 3-hydroxyacyl-CoA dehydrogenase, at 326,872 to 328,809 _0323 Dsui_0324: Dsui_0324 - EDD domain protein, DegV family, at 328,819 to 329,763 _0324 Dsui_0325: Dsui_0325 - acetyl-CoA acetyltransferase, at 329,771 to 331,069 _0325 Position (kb) 328 329 330Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 327.987 kb on - strand, within Dsui_0323at 328.171 kb on - strand, within Dsui_0323at 328.370 kb on + strand, within Dsui_0323at 328.388 kb on - strand, within Dsui_0323at 328.719 kb on - strandat 329.020 kb on - strand, within Dsui_0324at 329.024 kb on - strand, within Dsui_0324at 329.070 kb on - strand, within Dsui_0324at 329.081 kb on - strand, within Dsui_0324at 329.157 kb on + strand, within Dsui_0324at 329.157 kb on + strand, within Dsui_0324at 329.165 kb on - strand, within Dsui_0324at 329.213 kb on + strand, within Dsui_0324at 329.279 kb on - strand, within Dsui_0324at 329.346 kb on - strand, within Dsui_0324at 329.348 kb on + strand, within Dsui_0324at 329.387 kb on - strand, within Dsui_0324at 329.553 kb on + strandat 329.553 kb on + strand, within Dsui_0324at 329.598 kb on + strand, within Dsui_0324at 329.607 kb on - strand, within Dsui_0324at 329.912 kb on - strand, within Dsui_0325at 329.917 kb on - strand, within Dsui_0325at 329.950 kb on + strand, within Dsui_0325at 329.986 kb on - strand, within Dsui_0325at 329.991 kb on - strand, within Dsui_0325at 330.015 kb on + strand, within Dsui_0325at 330.040 kb on - strand, within Dsui_0325at 330.050 kb on - strand, within Dsui_0325at 330.075 kb on - strand, within Dsui_0325at 330.085 kb on - strand, within Dsui_0325at 330.090 kb on - strand, within Dsui_0325at 330.090 kb on - strand, within Dsui_0325at 330.148 kb on + strand, within Dsui_0325at 330.307 kb on + strand, within Dsui_0325at 330.314 kb on - strand, within Dsui_0325at 330.371 kb on - strand, within Dsui_0325at 330.429 kb on + strand, within Dsui_0325at 330.437 kb on - strand, within Dsui_0325at 330.437 kb on - strand, within Dsui_0325at 330.512 kb on + strand, within Dsui_0325at 330.535 kb on + strand, within Dsui_0325at 330.546 kb on + strand, within Dsui_0325at 330.546 kb on + strand, within Dsui_0325at 330.581 kb on - strand, within Dsui_0325at 330.616 kb on - strand, within Dsui_0325at 330.664 kb on - strand, within Dsui_0325at 330.664 kb on - strand, within Dsui_0325at 330.695 kb on + strand, within Dsui_0325at 330.735 kb on - strand, within Dsui_0325at 330.759 kb on + strand, within Dsui_0325at 330.760 kb on - strand, within Dsui_0325

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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327,987 - Dsui_0323 0.58 -0.4
328,171 - Dsui_0323 0.67 -4.4
328,370 + Dsui_0323 0.77 -0.8
328,388 - Dsui_0323 0.78 -1.1
328,719 - -4.2
329,020 - Dsui_0324 0.21 -1.3
329,024 - Dsui_0324 0.22 -0.6
329,070 - Dsui_0324 0.27 +0.3
329,081 - Dsui_0324 0.28 -0.8
329,157 + Dsui_0324 0.36 -1.2
329,157 + Dsui_0324 0.36 -2.4
329,165 - Dsui_0324 0.37 -1.7
329,213 + Dsui_0324 0.42 -0.8
329,279 - Dsui_0324 0.49 -1.3
329,346 - Dsui_0324 0.56 -3.1
329,348 + Dsui_0324 0.56 -3.7
329,387 - Dsui_0324 0.60 -1.0
329,553 + +0.8
329,553 + Dsui_0324 0.78 -0.2
329,598 + Dsui_0324 0.82 +0.8
329,607 - Dsui_0324 0.83 -0.6
329,912 - Dsui_0325 0.11 -0.5
329,917 - Dsui_0325 0.11 -1.0
329,950 + Dsui_0325 0.14 +0.8
329,986 - Dsui_0325 0.17 -1.4
329,991 - Dsui_0325 0.17 -1.2
330,015 + Dsui_0325 0.19 -1.2
330,040 - Dsui_0325 0.21 +0.0
330,050 - Dsui_0325 0.21 -1.8
330,075 - Dsui_0325 0.23 -1.8
330,085 - Dsui_0325 0.24 -0.6
330,090 - Dsui_0325 0.25 -0.4
330,090 - Dsui_0325 0.25 -2.6
330,148 + Dsui_0325 0.29 -1.2
330,307 + Dsui_0325 0.41 +0.8
330,314 - Dsui_0325 0.42 -0.2
330,371 - Dsui_0325 0.46 -0.6
330,429 + Dsui_0325 0.51 -0.2
330,437 - Dsui_0325 0.51 -0.5
330,437 - Dsui_0325 0.51 -0.6
330,512 + Dsui_0325 0.57 +0.8
330,535 + Dsui_0325 0.59 -1.2
330,546 + Dsui_0325 0.60 +0.8
330,546 + Dsui_0325 0.60 +0.8
330,581 - Dsui_0325 0.62 -0.6
330,616 - Dsui_0325 0.65 -0.8
330,664 - Dsui_0325 0.69 -2.1
330,664 - Dsui_0325 0.69 -0.4
330,695 + Dsui_0325 0.71 -0.8
330,735 - Dsui_0325 0.74 -0.7
330,759 + Dsui_0325 0.76 -0.2
330,760 - Dsui_0325 0.76 -0.7

Or see this region's nucleotide sequence