Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0307 and Dsui_0308 are separated by 132 nucleotides Dsui_0308 and Dsui_0309 are separated by 2 nucleotides
Dsui_0307: Dsui_0307 - methyl-accepting chemotaxis protein, at 308,086 to 309,693
_0307
Dsui_0308: Dsui_0308 - Major Facilitator Superfamily transporter, at 309,826 to 311,151
_0308
Dsui_0309: Dsui_0309 - DNA/RNA helicase, superfamily II, at 311,154 to 312,485
_0309
Position (kb) 309
310
311
312 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.832 kb on + strand, within Dsui_0307 at 308.887 kb on + strand, within Dsui_0307 at 309.116 kb on + strand, within Dsui_0307 at 309.116 kb on + strand at 309.126 kb on + strand, within Dsui_0307 at 309.129 kb on - strand, within Dsui_0307 at 309.129 kb on - strand, within Dsui_0307 at 309.134 kb on - strand, within Dsui_0307 at 309.217 kb on - strand, within Dsui_0307 at 309.323 kb on - strand, within Dsui_0307 at 309.504 kb on + strand at 309.573 kb on - strand at 309.603 kb on + strand at 309.659 kb on + strand at 309.667 kb on - strand at 309.667 kb on - strand at 309.667 kb on - strand at 309.769 kb on + strand at 309.928 kb on - strand at 309.928 kb on - strand at 310.155 kb on + strand at 310.286 kb on - strand, within Dsui_0308 at 310.292 kb on + strand, within Dsui_0308 at 310.389 kb on + strand at 310.427 kb on + strand at 310.790 kb on - strand, within Dsui_0308 at 310.871 kb on - strand, within Dsui_0308 at 310.932 kb on + strand, within Dsui_0308 at 310.965 kb on + strand at 311.155 kb on - strand at 311.160 kb on + strand at 311.274 kb on + strand at 311.329 kb on - strand, within Dsui_0309 at 311.334 kb on + strand, within Dsui_0309 at 311.335 kb on + strand at 311.365 kb on - strand, within Dsui_0309 at 311.397 kb on + strand at 311.413 kb on - strand, within Dsui_0309 at 311.437 kb on + strand, within Dsui_0309 at 311.525 kb on + strand at 311.569 kb on + strand, within Dsui_0309 at 311.611 kb on + strand, within Dsui_0309 at 311.652 kb on - strand, within Dsui_0309 at 311.698 kb on + strand, within Dsui_0309 at 311.719 kb on + strand, within Dsui_0309 at 311.776 kb on + strand at 311.776 kb on + strand at 311.783 kb on + strand, within Dsui_0309 at 311.861 kb on + strand at 311.896 kb on + strand, within Dsui_0309 at 311.896 kb on + strand at 311.941 kb on + strand at 312.073 kb on - strand, within Dsui_0309 at 312.108 kb on + strand, within Dsui_0309 at 312.108 kb on + strand at 312.115 kb on + strand, within Dsui_0309 at 312.116 kb on - strand, within Dsui_0309
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 308,832 + Dsui_0307 0.46 -0.2 308,832 + Dsui_0307 0.46 -0.8 308,832 + Dsui_0307 0.46 -0.8 308,832 + Dsui_0307 0.46 +0.8 308,887 + Dsui_0307 0.50 -1.8 309,116 + Dsui_0307 0.64 +0.8 309,116 + +0.8 309,126 + Dsui_0307 0.65 -1.2 309,129 - Dsui_0307 0.65 -2.4 309,129 - Dsui_0307 0.65 -3.2 309,134 - Dsui_0307 0.65 -4.6 309,217 - Dsui_0307 0.70 -0.9 309,323 - Dsui_0307 0.77 -2.6 309,504 + +0.8 309,573 - -1.0 309,603 + +0.8 309,659 + +0.8 309,667 - -2.5 309,667 - -3.3 309,667 - -0.9 309,769 + -0.8 309,928 - -0.2 309,928 - +0.8 310,155 + -1.2 310,286 - Dsui_0308 0.35 -2.4 310,292 + Dsui_0308 0.35 -1.2 310,389 + +0.8 310,427 + +0.8 310,790 - Dsui_0308 0.73 -0.8 310,871 - Dsui_0308 0.79 -3.1 310,932 + Dsui_0308 0.83 -2.2 310,965 + +0.8 311,155 - -1.7 311,160 + +0.8 311,274 + -1.8 311,329 - Dsui_0309 0.13 -1.1 311,334 + Dsui_0309 0.14 -0.8 311,335 + +0.8 311,365 - Dsui_0309 0.16 -0.6 311,397 + +0.8 311,413 - Dsui_0309 0.19 -2.2 311,437 + Dsui_0309 0.21 -1.2 311,525 + +0.8 311,569 + Dsui_0309 0.31 +0.8 311,611 + Dsui_0309 0.34 -0.2 311,652 - Dsui_0309 0.37 -0.8 311,698 + Dsui_0309 0.41 -0.8 311,719 + Dsui_0309 0.42 +0.8 311,776 + +0.8 311,776 + +0.8 311,783 + Dsui_0309 0.47 -2.0 311,861 + +0.8 311,896 + Dsui_0309 0.56 +0.8 311,896 + +0.8 311,941 + +0.8 312,073 - Dsui_0309 0.69 -1.3 312,108 + Dsui_0309 0.72 -0.2 312,108 + -1.6 312,115 + Dsui_0309 0.72 +0.8 312,116 - Dsui_0309 0.72 -0.8
Or see this region's nucleotide sequence