Strain Fitness in Dechlorosoma suillum PS around Dsui_0308

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0307 and Dsui_0308 are separated by 132 nucleotidesDsui_0308 and Dsui_0309 are separated by 2 nucleotides Dsui_0307: Dsui_0307 - methyl-accepting chemotaxis protein, at 308,086 to 309,693 _0307 Dsui_0308: Dsui_0308 - Major Facilitator Superfamily transporter, at 309,826 to 311,151 _0308 Dsui_0309: Dsui_0309 - DNA/RNA helicase, superfamily II, at 311,154 to 312,485 _0309 Position (kb) 309 310 311 312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 308.832 kb on + strand, within Dsui_0307at 308.832 kb on + strand, within Dsui_0307at 308.832 kb on + strand, within Dsui_0307at 308.832 kb on + strand, within Dsui_0307at 308.887 kb on + strand, within Dsui_0307at 309.116 kb on + strand, within Dsui_0307at 309.116 kb on + strandat 309.126 kb on + strand, within Dsui_0307at 309.129 kb on - strand, within Dsui_0307at 309.129 kb on - strand, within Dsui_0307at 309.134 kb on - strand, within Dsui_0307at 309.217 kb on - strand, within Dsui_0307at 309.323 kb on - strand, within Dsui_0307at 309.504 kb on + strandat 309.573 kb on - strandat 309.603 kb on + strandat 309.659 kb on + strandat 309.667 kb on - strandat 309.667 kb on - strandat 309.667 kb on - strandat 309.769 kb on + strandat 309.928 kb on - strandat 309.928 kb on - strandat 310.155 kb on + strandat 310.286 kb on - strand, within Dsui_0308at 310.292 kb on + strand, within Dsui_0308at 310.389 kb on + strandat 310.427 kb on + strandat 310.790 kb on - strand, within Dsui_0308at 310.871 kb on - strand, within Dsui_0308at 310.932 kb on + strand, within Dsui_0308at 310.965 kb on + strandat 311.155 kb on - strandat 311.160 kb on + strandat 311.274 kb on + strandat 311.329 kb on - strand, within Dsui_0309at 311.334 kb on + strand, within Dsui_0309at 311.335 kb on + strandat 311.365 kb on - strand, within Dsui_0309at 311.397 kb on + strandat 311.413 kb on - strand, within Dsui_0309at 311.437 kb on + strand, within Dsui_0309at 311.525 kb on + strandat 311.569 kb on + strand, within Dsui_0309at 311.611 kb on + strand, within Dsui_0309at 311.652 kb on - strand, within Dsui_0309at 311.698 kb on + strand, within Dsui_0309at 311.719 kb on + strand, within Dsui_0309at 311.776 kb on + strandat 311.776 kb on + strandat 311.783 kb on + strand, within Dsui_0309at 311.861 kb on + strandat 311.896 kb on + strand, within Dsui_0309at 311.896 kb on + strandat 311.941 kb on + strandat 312.073 kb on - strand, within Dsui_0309at 312.108 kb on + strand, within Dsui_0309at 312.108 kb on + strandat 312.115 kb on + strand, within Dsui_0309at 312.116 kb on - strand, within Dsui_0309

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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308,832 + Dsui_0307 0.46 -0.2
308,832 + Dsui_0307 0.46 -0.8
308,832 + Dsui_0307 0.46 -0.8
308,832 + Dsui_0307 0.46 +0.8
308,887 + Dsui_0307 0.50 -1.8
309,116 + Dsui_0307 0.64 +0.8
309,116 + +0.8
309,126 + Dsui_0307 0.65 -1.2
309,129 - Dsui_0307 0.65 -2.4
309,129 - Dsui_0307 0.65 -3.2
309,134 - Dsui_0307 0.65 -4.6
309,217 - Dsui_0307 0.70 -0.9
309,323 - Dsui_0307 0.77 -2.6
309,504 + +0.8
309,573 - -1.0
309,603 + +0.8
309,659 + +0.8
309,667 - -2.5
309,667 - -3.3
309,667 - -0.9
309,769 + -0.8
309,928 - -0.2
309,928 - +0.8
310,155 + -1.2
310,286 - Dsui_0308 0.35 -2.4
310,292 + Dsui_0308 0.35 -1.2
310,389 + +0.8
310,427 + +0.8
310,790 - Dsui_0308 0.73 -0.8
310,871 - Dsui_0308 0.79 -3.1
310,932 + Dsui_0308 0.83 -2.2
310,965 + +0.8
311,155 - -1.7
311,160 + +0.8
311,274 + -1.8
311,329 - Dsui_0309 0.13 -1.1
311,334 + Dsui_0309 0.14 -0.8
311,335 + +0.8
311,365 - Dsui_0309 0.16 -0.6
311,397 + +0.8
311,413 - Dsui_0309 0.19 -2.2
311,437 + Dsui_0309 0.21 -1.2
311,525 + +0.8
311,569 + Dsui_0309 0.31 +0.8
311,611 + Dsui_0309 0.34 -0.2
311,652 - Dsui_0309 0.37 -0.8
311,698 + Dsui_0309 0.41 -0.8
311,719 + Dsui_0309 0.42 +0.8
311,776 + +0.8
311,776 + +0.8
311,783 + Dsui_0309 0.47 -2.0
311,861 + +0.8
311,896 + Dsui_0309 0.56 +0.8
311,896 + +0.8
311,941 + +0.8
312,073 - Dsui_0309 0.69 -1.3
312,108 + Dsui_0309 0.72 -0.2
312,108 + -1.6
312,115 + Dsui_0309 0.72 +0.8
312,116 - Dsui_0309 0.72 -0.8

Or see this region's nucleotide sequence