Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0298 and Dsui_0299 are separated by 84 nucleotides Dsui_0299 and Dsui_0300 are separated by 4 nucleotides Dsui_0300 and Dsui_0301 are separated by 31 nucleotides Dsui_0301 and Dsui_0302 are separated by 160 nucleotides
Dsui_0298: Dsui_0298 - Kef-type K+ ransport system, predicted NAD-binding component, at 299,543 to 300,421
_0298
Dsui_0299: Dsui_0299 - acetyltransferase, at 300,506 to 300,991
_0299
Dsui_0300: Dsui_0300 - response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 300,996 to 302,621
_0300
Dsui_0301: Dsui_0301 - histidine kinase, at 302,653 to 303,342
_0301
Dsui_0302: Dsui_0302 - UbiD family decarboxylase, at 303,503 to 304,978
_0302
Position (kb)
300
301
302
303 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 299.999 kb on - strand, within Dsui_0298 at 300.001 kb on + strand, within Dsui_0298 at 300.001 kb on + strand, within Dsui_0298 at 300.027 kb on - strand, within Dsui_0298 at 300.098 kb on - strand, within Dsui_0298 at 300.149 kb on + strand, within Dsui_0298 at 300.149 kb on + strand at 300.152 kb on - strand, within Dsui_0298 at 300.174 kb on + strand at 300.182 kb on - strand, within Dsui_0298 at 300.237 kb on - strand, within Dsui_0298 at 300.243 kb on - strand, within Dsui_0298 at 300.272 kb on + strand, within Dsui_0298 at 300.525 kb on + strand at 300.533 kb on - strand at 300.564 kb on - strand, within Dsui_0299 at 300.616 kb on + strand at 300.616 kb on + strand at 300.663 kb on + strand at 300.671 kb on - strand, within Dsui_0299 at 300.671 kb on - strand, within Dsui_0299 at 300.677 kb on + strand at 300.734 kb on + strand, within Dsui_0299 at 300.800 kb on - strand, within Dsui_0299 at 300.812 kb on - strand, within Dsui_0299 at 300.933 kb on - strand, within Dsui_0299 at 300.961 kb on + strand at 301.046 kb on - strand at 301.124 kb on + strand at 301.132 kb on - strand at 301.132 kb on - strand at 301.241 kb on + strand, within Dsui_0300 at 301.285 kb on + strand, within Dsui_0300 at 301.303 kb on - strand, within Dsui_0300 at 301.353 kb on - strand, within Dsui_0300 at 301.374 kb on + strand, within Dsui_0300 at 301.387 kb on + strand, within Dsui_0300 at 301.548 kb on + strand, within Dsui_0300 at 301.576 kb on + strand, within Dsui_0300 at 301.582 kb on + strand, within Dsui_0300 at 301.590 kb on - strand, within Dsui_0300 at 301.590 kb on - strand, within Dsui_0300 at 301.597 kb on + strand, within Dsui_0300 at 301.616 kb on + strand, within Dsui_0300 at 301.698 kb on + strand, within Dsui_0300 at 301.706 kb on - strand, within Dsui_0300 at 301.787 kb on - strand, within Dsui_0300 at 301.896 kb on + strand, within Dsui_0300 at 301.903 kb on + strand, within Dsui_0300 at 301.923 kb on - strand, within Dsui_0300 at 301.935 kb on + strand, within Dsui_0300 at 301.956 kb on - strand, within Dsui_0300 at 301.987 kb on - strand, within Dsui_0300 at 302.002 kb on - strand, within Dsui_0300 at 302.079 kb on + strand, within Dsui_0300 at 302.124 kb on + strand, within Dsui_0300 at 302.127 kb on - strand, within Dsui_0300 at 302.169 kb on + strand, within Dsui_0300 at 302.221 kb on - strand, within Dsui_0300 at 302.271 kb on - strand, within Dsui_0300 at 302.271 kb on - strand, within Dsui_0300 at 302.297 kb on - strand, within Dsui_0300 at 302.307 kb on - strand, within Dsui_0300 at 302.512 kb on - strand at 302.516 kb on + strand at 302.524 kb on - strand at 302.538 kb on + strand at 302.649 kb on - strand at 302.651 kb on + strand at 302.662 kb on + strand at 302.882 kb on - strand, within Dsui_0301 at 302.924 kb on + strand at 302.987 kb on + strand, within Dsui_0301 at 303.007 kb on + strand, within Dsui_0301 at 303.061 kb on - strand, within Dsui_0301 at 303.315 kb on + strand at 303.323 kb on - strand at 303.433 kb on - strand at 303.516 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 299,999 - Dsui_0298 0.52 +1.4 300,001 + Dsui_0298 0.52 +0.8 300,001 + Dsui_0298 0.52 +0.8 300,027 - Dsui_0298 0.55 -3.0 300,098 - Dsui_0298 0.63 -1.9 300,149 + Dsui_0298 0.69 -2.0 300,149 + +0.8 300,152 - Dsui_0298 0.69 -1.1 300,174 + +0.8 300,182 - Dsui_0298 0.73 -2.3 300,237 - Dsui_0298 0.79 -2.8 300,243 - Dsui_0298 0.80 -0.8 300,272 + Dsui_0298 0.83 -0.8 300,525 + -1.2 300,533 - -0.2 300,564 - Dsui_0299 0.12 -0.4 300,616 + -0.8 300,616 + +0.8 300,663 + +0.8 300,671 - Dsui_0299 0.34 -1.6 300,671 - Dsui_0299 0.34 -4.2 300,677 + -0.2 300,734 + Dsui_0299 0.47 -1.2 300,800 - Dsui_0299 0.60 +0.3 300,812 - Dsui_0299 0.63 -0.1 300,933 - Dsui_0299 0.88 -2.1 300,961 + -0.2 301,046 - +0.2 301,124 + +0.8 301,132 - -1.5 301,132 - -1.2 301,241 + Dsui_0300 0.15 +0.8 301,285 + Dsui_0300 0.18 +0.8 301,303 - Dsui_0300 0.19 -1.8 301,353 - Dsui_0300 0.22 -1.0 301,374 + Dsui_0300 0.23 -1.6 301,387 + Dsui_0300 0.24 -1.2 301,548 + Dsui_0300 0.34 -1.6 301,576 + Dsui_0300 0.36 -1.6 301,582 + Dsui_0300 0.36 -0.2 301,590 - Dsui_0300 0.37 -3.1 301,590 - Dsui_0300 0.37 -5.1 301,597 + Dsui_0300 0.37 -0.2 301,616 + Dsui_0300 0.38 -0.8 301,698 + Dsui_0300 0.43 +0.8 301,706 - Dsui_0300 0.44 -1.6 301,787 - Dsui_0300 0.49 -1.0 301,896 + Dsui_0300 0.55 -0.2 301,903 + Dsui_0300 0.56 -2.8 301,923 - Dsui_0300 0.57 -1.4 301,935 + Dsui_0300 0.58 -1.2 301,956 - Dsui_0300 0.59 -0.9 301,987 - Dsui_0300 0.61 -0.5 302,002 - Dsui_0300 0.62 -1.1 302,079 + Dsui_0300 0.67 -0.2 302,124 + Dsui_0300 0.69 -0.8 302,127 - Dsui_0300 0.70 -0.5 302,169 + Dsui_0300 0.72 +0.8 302,221 - Dsui_0300 0.75 -1.9 302,271 - Dsui_0300 0.78 -0.6 302,271 - Dsui_0300 0.78 -0.0 302,297 - Dsui_0300 0.80 -1.5 302,307 - Dsui_0300 0.81 -0.4 302,512 - -0.1 302,516 + +0.8 302,524 - -2.1 302,538 + +0.8 302,649 - -1.5 302,651 + -0.8 302,662 + -1.2 302,882 - Dsui_0301 0.33 -1.2 302,924 + +0.8 302,987 + Dsui_0301 0.48 -0.2 303,007 + Dsui_0301 0.51 -1.2 303,061 - Dsui_0301 0.59 -2.8 303,315 + +1.4 303,323 - -0.6 303,433 - -1.5 303,516 - -1.8
Or see this region's nucleotide sequence