Strain Fitness in Dechlorosoma suillum PS around Dsui_0269

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0268 and Dsui_0269 are separated by 9 nucleotidesDsui_0269 and Dsui_0270 are separated by 8 nucleotidesDsui_0270 and Dsui_0271 are separated by 77 nucleotides Dsui_0268: Dsui_0268 - ABC-type multidrug transport system, ATPase component, at 267,757 to 270,513 _0268 Dsui_0269: Dsui_0269 - ABC-type multidrug transport system, permease component, at 270,523 to 271,659 _0269 Dsui_0270: Dsui_0270 - transcriptional regulator, at 271,668 to 272,336 _0270 Dsui_0271: Dsui_0271 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 272,414 to 273,121 _0271 Position (kb) 270 271 272Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 269.533 kb on - strand, within Dsui_0268at 269.617 kb on - strand, within Dsui_0268at 269.797 kb on + strand, within Dsui_0268at 269.860 kb on + strand, within Dsui_0268at 269.863 kb on - strandat 269.865 kb on + strand, within Dsui_0268at 269.873 kb on - strandat 269.874 kb on - strand, within Dsui_0268at 270.014 kb on + strand, within Dsui_0268at 270.032 kb on - strand, within Dsui_0268at 270.042 kb on - strandat 270.088 kb on - strand, within Dsui_0268at 270.135 kb on - strand, within Dsui_0268at 270.186 kb on + strand, within Dsui_0268at 270.194 kb on - strandat 270.209 kb on + strand, within Dsui_0268at 270.209 kb on + strand, within Dsui_0268at 270.217 kb on - strand, within Dsui_0268at 270.217 kb on - strand, within Dsui_0268at 270.240 kb on + strandat 270.360 kb on - strandat 270.360 kb on - strandat 270.409 kb on + strandat 270.414 kb on + strandat 270.455 kb on + strandat 270.463 kb on - strandat 270.705 kb on + strand, within Dsui_0269at 270.705 kb on - strand, within Dsui_0269at 270.750 kb on + strand, within Dsui_0269at 270.818 kb on + strand, within Dsui_0269at 270.918 kb on - strand, within Dsui_0269at 270.918 kb on - strand, within Dsui_0269at 271.029 kb on + strand, within Dsui_0269at 271.067 kb on + strand, within Dsui_0269at 271.171 kb on + strand, within Dsui_0269at 271.179 kb on - strand, within Dsui_0269at 271.189 kb on - strand, within Dsui_0269at 271.203 kb on + strand, within Dsui_0269at 271.211 kb on - strand, within Dsui_0269at 271.329 kb on - strand, within Dsui_0269at 271.340 kb on - strand, within Dsui_0269at 271.383 kb on + strand, within Dsui_0269at 271.412 kb on + strand, within Dsui_0269at 271.529 kb on - strand, within Dsui_0269at 271.653 kb on + strandat 271.661 kb on - strandat 271.844 kb on - strand, within Dsui_0270at 272.039 kb on + strand, within Dsui_0270at 272.039 kb on + strand, within Dsui_0270at 272.047 kb on - strand, within Dsui_0270at 272.167 kb on + strand, within Dsui_0270at 272.226 kb on + strand, within Dsui_0270at 272.478 kb on + strandat 272.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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269,533 - Dsui_0268 0.64 -0.2
269,617 - Dsui_0268 0.67 +0.8
269,797 + Dsui_0268 0.74 -2.0
269,860 + Dsui_0268 0.76 -1.2
269,863 - +0.8
269,865 + Dsui_0268 0.76 -1.7
269,873 - +0.8
269,874 - Dsui_0268 0.77 +0.8
270,014 + Dsui_0268 0.82 -2.7
270,032 - Dsui_0268 0.83 -0.8
270,042 - +3.1
270,088 - Dsui_0268 0.85 -0.2
270,135 - Dsui_0268 0.86 -0.2
270,186 + Dsui_0268 0.88 -2.0
270,194 - +0.8
270,209 + Dsui_0268 0.89 -1.3
270,209 + Dsui_0268 0.89 -1.7
270,217 - Dsui_0268 0.89 -2.0
270,217 - Dsui_0268 0.89 -0.8
270,240 + -3.7
270,360 - -0.2
270,360 - -0.2
270,409 + -2.0
270,414 + -0.2
270,455 + -1.5
270,463 - +0.8
270,705 + Dsui_0269 0.16 -2.0
270,705 - Dsui_0269 0.16 -0.8
270,750 + Dsui_0269 0.20 -0.8
270,818 + Dsui_0269 0.26 -0.7
270,918 - Dsui_0269 0.35 -0.8
270,918 - Dsui_0269 0.35 -0.2
271,029 + Dsui_0269 0.45 -1.8
271,067 + Dsui_0269 0.48 -0.8
271,171 + Dsui_0269 0.57 -0.8
271,179 - Dsui_0269 0.58 +0.8
271,189 - Dsui_0269 0.59 -3.0
271,203 + Dsui_0269 0.60 -0.8
271,211 - Dsui_0269 0.61 +0.8
271,329 - Dsui_0269 0.71 +0.8
271,340 - Dsui_0269 0.72 -0.8
271,383 + Dsui_0269 0.76 -2.6
271,412 + Dsui_0269 0.78 -0.5
271,529 - Dsui_0269 0.88 +0.8
271,653 + -1.4
271,661 - +0.8
271,844 - Dsui_0270 0.26 -1.2
272,039 + Dsui_0270 0.55 -1.0
272,039 + Dsui_0270 0.55 -0.2
272,047 - Dsui_0270 0.57 +0.8
272,167 + Dsui_0270 0.75 -0.9
272,226 + Dsui_0270 0.83 -3.2
272,478 + -0.8
272,502 + -0.2

Or see this region's nucleotide sequence