Strain Fitness in Dechlorosoma suillum PS around Dsui_0201

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0198 and Dsui_0199 overlap by 4 nucleotidesDsui_0199 and Dsui_0200 overlap by 4 nucleotidesDsui_0200 and Dsui_0201 are separated by 55 nucleotidesDsui_0201 and Dsui_0202 are separated by 3 nucleotidesDsui_0202 and Dsui_0203 are separated by 14 nucleotidesDsui_0203 and Dsui_0204 are separated by 1 nucleotides Dsui_0198: Dsui_0198 - phage conserved hypothetical protein, phiE125 gp8 family, at 199,487 to 200,035 _0198 Dsui_0199: Dsui_0199 - Bacteriophage protein of unknown function (DUF646), at 200,032 to 200,517 _0199 Dsui_0200: Dsui_0200 - hypothetical protein, at 200,514 to 200,936 _0200 Dsui_0201: Dsui_0201 - hypothetical protein, at 200,992 to 201,759 _0201 Dsui_0202: Dsui_0202 - hypothetical protein, at 201,763 to 202,095 _0202 Dsui_0203: Dsui_0203 - hypothetical protein, at 202,110 to 202,382 _0203 Dsui_0204: Dsui_0204 - hypothetical protein, at 202,384 to 204,846 _0204 Position (kb) 200 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1at 200.070 kb on - strandat 200.121 kb on - strand, within Dsui_0199at 200.343 kb on + strand, within Dsui_0199at 200.454 kb on - strand, within Dsui_0199at 200.454 kb on - strand, within Dsui_0199at 200.528 kb on + strandat 200.541 kb on + strandat 200.543 kb on + strandat 200.551 kb on + strandat 200.559 kb on - strand, within Dsui_0200at 200.602 kb on + strand, within Dsui_0200at 200.613 kb on + strand, within Dsui_0200at 200.696 kb on + strand, within Dsui_0200at 200.905 kb on - strandat 200.949 kb on - strandat 200.952 kb on + strandat 200.952 kb on + strandat 200.960 kb on - strandat 200.970 kb on + strandat 200.978 kb on - strandat 200.998 kb on - strandat 201.056 kb on - strandat 201.185 kb on - strand, within Dsui_0201at 201.195 kb on + strand, within Dsui_0201at 201.231 kb on - strand, within Dsui_0201at 201.299 kb on + strand, within Dsui_0201at 201.322 kb on - strand, within Dsui_0201at 201.367 kb on - strand, within Dsui_0201at 201.427 kb on + strand, within Dsui_0201at 201.510 kb on - strand, within Dsui_0201at 201.757 kb on - strandat 201.850 kb on - strand, within Dsui_0202at 201.881 kb on - strand, within Dsui_0202at 201.881 kb on - strandat 202.083 kb on - strandat 202.122 kb on - strandat 202.137 kb on + strandat 202.156 kb on - strand, within Dsui_0203at 202.183 kb on - strand, within Dsui_0203at 202.380 kb on - strandat 202.412 kb on + strandat 202.413 kb on + strandat 202.559 kb on + strandat 202.567 kb on - strandat 202.567 kb on - strandat 202.569 kb on + strandat 202.654 kb on + strand, within Dsui_0204at 202.659 kb on + strand, within Dsui_0204

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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200,070 - -1.6
200,121 - Dsui_0199 0.18 -0.9
200,343 + Dsui_0199 0.64 -0.3
200,454 - Dsui_0199 0.87 -0.9
200,454 - Dsui_0199 0.87 +0.7
200,528 + +0.7
200,541 + +0.7
200,543 + +0.7
200,551 + +0.7
200,559 - Dsui_0200 0.11 +0.7
200,602 + Dsui_0200 0.21 -1.3
200,613 + Dsui_0200 0.23 -2.9
200,696 + Dsui_0200 0.43 -0.9
200,905 - -0.3
200,949 - +0.7
200,952 + -0.3
200,952 + -0.3
200,960 - -1.9
200,970 + +0.7
200,978 - +0.7
200,998 - -0.3
201,056 - +0.7
201,185 - Dsui_0201 0.25 -0.9
201,195 + Dsui_0201 0.26 -1.6
201,231 - Dsui_0201 0.31 +0.7
201,299 + Dsui_0201 0.40 -0.9
201,322 - Dsui_0201 0.43 +0.7
201,367 - Dsui_0201 0.49 +0.7
201,427 + Dsui_0201 0.57 +0.7
201,510 - Dsui_0201 0.67 +0.7
201,757 - +0.7
201,850 - Dsui_0202 0.26 +0.7
201,881 - Dsui_0202 0.35 -0.9
201,881 - +0.7
202,083 - +0.7
202,122 - +0.7
202,137 + -0.3
202,156 - Dsui_0203 0.17 -1.3
202,183 - Dsui_0203 0.27 +0.7
202,380 - -0.3
202,412 + -0.3
202,413 + -0.3
202,559 + +0.7
202,567 - +0.7
202,567 - -0.3
202,569 + +0.7
202,654 + Dsui_0204 0.11 -0.3
202,659 + Dsui_0204 0.11 +0.7

Or see this region's nucleotide sequence