Strain Fitness in Dechlorosoma suillum PS around Dsui_0131

Experiment: ALP with copper (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0130 and Dsui_0131 are separated by 445 nucleotidesDsui_0131 and Dsui_0132 are separated by 101 nucleotides Dsui_0130: Dsui_0130 - malic enzyme, at 128,463 to 130,739 _0130 Dsui_0131: Dsui_0131 - phosphoenolpyruvate carboxykinase (GTP), at 131,185 to 133,044 _0131 Dsui_0132: Dsui_0132 - aspartate/tyrosine/aromatic aminotransferase, at 133,146 to 134,303 _0132 Position (kb) 131 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1at 130.308 kb on - strand, within Dsui_0130at 130.311 kb on + strand, within Dsui_0130at 130.318 kb on + strand, within Dsui_0130at 130.326 kb on - strand, within Dsui_0130at 130.326 kb on - strand, within Dsui_0130at 130.342 kb on - strand, within Dsui_0130at 130.363 kb on - strand, within Dsui_0130at 130.380 kb on - strand, within Dsui_0130at 130.438 kb on + strandat 130.460 kb on - strand, within Dsui_0130at 130.461 kb on - strand, within Dsui_0130at 130.631 kb on - strandat 130.660 kb on - strandat 130.660 kb on - strandat 130.677 kb on - strandat 130.699 kb on + strandat 130.714 kb on + strandat 130.722 kb on - strandat 130.732 kb on - strandat 130.741 kb on + strandat 130.781 kb on + strandat 130.791 kb on + strandat 130.799 kb on - strandat 130.799 kb on - strandat 130.815 kb on + strandat 130.823 kb on - strandat 130.823 kb on - strandat 130.823 kb on - strandat 130.823 kb on - strandat 130.829 kb on - strandat 130.834 kb on + strandat 130.842 kb on - strandat 130.878 kb on + strandat 130.879 kb on + strandat 130.886 kb on - strandat 130.887 kb on - strandat 130.955 kb on + strandat 131.012 kb on - strandat 131.037 kb on - strandat 131.054 kb on + strandat 131.057 kb on - strandat 131.062 kb on - strandat 131.089 kb on + strandat 131.093 kb on + strandat 131.099 kb on + strandat 131.099 kb on + strandat 131.122 kb on + strandat 131.172 kb on - strandat 131.175 kb on + strandat 131.175 kb on + strandat 131.175 kb on + strandat 131.175 kb on + strandat 131.183 kb on - strandat 131.183 kb on - strandat 131.183 kb on - strandat 131.199 kb on - strandat 131.201 kb on + strandat 131.201 kb on + strandat 131.211 kb on + strandat 131.211 kb on + strandat 131.229 kb on + strandat 131.236 kb on + strandat 131.247 kb on + strandat 131.273 kb on + strandat 131.277 kb on + strandat 131.277 kb on + strandat 131.277 kb on + strandat 131.277 kb on + strandat 131.277 kb on + strandat 131.277 kb on + strandat 131.285 kb on - strandat 131.285 kb on - strandat 131.285 kb on - strandat 131.285 kb on - strandat 131.285 kb on - strandat 131.285 kb on - strandat 131.285 kb on - strandat 131.291 kb on + strandat 131.309 kb on + strandat 131.309 kb on + strandat 131.339 kb on - strandat 131.364 kb on + strandat 131.372 kb on - strand, within Dsui_0131at 131.396 kb on - strandat 131.408 kb on + strand, within Dsui_0131at 131.408 kb on + strand, within Dsui_0131at 131.416 kb on - strand, within Dsui_0131at 131.417 kb on + strand, within Dsui_0131at 131.422 kb on + strand, within Dsui_0131at 131.434 kb on + strand, within Dsui_0131at 131.456 kb on + strand, within Dsui_0131at 131.482 kb on - strand, within Dsui_0131at 131.493 kb on - strandat 131.506 kb on + strand, within Dsui_0131at 131.535 kb on + strand, within Dsui_0131at 131.535 kb on + strand, within Dsui_0131at 131.535 kb on + strand, within Dsui_0131at 131.535 kb on + strand, within Dsui_0131at 131.543 kb on - strand, within Dsui_0131at 131.543 kb on - strand, within Dsui_0131at 131.576 kb on - strand, within Dsui_0131at 131.663 kb on + strand, within Dsui_0131at 131.676 kb on + strand, within Dsui_0131at 131.703 kb on - strand, within Dsui_0131at 131.705 kb on + strand, within Dsui_0131at 131.733 kb on + strand, within Dsui_0131at 131.794 kb on + strand, within Dsui_0131at 131.816 kb on - strand, within Dsui_0131at 131.855 kb on - strand, within Dsui_0131at 131.880 kb on + strand, within Dsui_0131at 131.882 kb on + strand, within Dsui_0131at 131.882 kb on + strand, within Dsui_0131at 131.888 kb on - strand, within Dsui_0131at 131.907 kb on - strand, within Dsui_0131at 131.993 kb on + strand, within Dsui_0131at 132.067 kb on - strand, within Dsui_0131at 132.069 kb on + strand, within Dsui_0131at 132.132 kb on + strand, within Dsui_0131at 132.140 kb on - strand, within Dsui_0131at 132.247 kb on + strand, within Dsui_0131at 132.247 kb on + strand, within Dsui_0131at 132.255 kb on - strand, within Dsui_0131at 132.275 kb on + strand, within Dsui_0131at 132.278 kb on - strand, within Dsui_0131at 132.283 kb on - strand, within Dsui_0131at 132.335 kb on - strand, within Dsui_0131at 132.353 kb on - strand, within Dsui_0131at 132.485 kb on + strand, within Dsui_0131at 132.526 kb on + strand, within Dsui_0131at 132.532 kb on - strand, within Dsui_0131at 132.539 kb on + strand, within Dsui_0131at 132.839 kb on - strand, within Dsui_0131at 133.024 kb on - strandat 133.026 kb on + strandat 133.026 kb on + strandat 133.034 kb on - strandat 133.107 kb on + strandat 133.114 kb on + strandat 133.122 kb on - strandat 133.122 kb on - strandat 133.200 kb on - strandat 133.257 kb on - strandat 133.339 kb on + strand, within Dsui_0132at 133.339 kb on + strand, within Dsui_0132at 133.344 kb on + strand, within Dsui_0132at 133.352 kb on - strand, within Dsui_0132at 133.353 kb on - strand, within Dsui_0132at 133.467 kb on - strand, within Dsui_0132at 133.472 kb on - strand, within Dsui_0132at 133.554 kb on - strandat 133.622 kb on + strand, within Dsui_0132at 133.622 kb on + strand, within Dsui_0132at 133.649 kb on + strand, within Dsui_0132at 133.650 kb on + strand, within Dsui_0132at 133.684 kb on + strand, within Dsui_0132at 133.685 kb on + strand, within Dsui_0132at 133.822 kb on - strand, within Dsui_0132at 133.835 kb on - strand, within Dsui_0132at 133.840 kb on - strand, within Dsui_0132at 133.885 kb on + strandat 133.895 kb on - strand, within Dsui_0132at 133.895 kb on - strand, within Dsui_0132at 133.961 kb on - strand, within Dsui_0132at 133.998 kb on - strand, within Dsui_0132

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
remove
130,308 - Dsui_0130 0.81 -0.7
130,311 + Dsui_0130 0.81 -0.3
130,318 + Dsui_0130 0.81 +0.7
130,326 - Dsui_0130 0.82 -1.4
130,326 - Dsui_0130 0.82 -2.0
130,342 - Dsui_0130 0.83 -2.0
130,363 - Dsui_0130 0.83 -1.5
130,380 - Dsui_0130 0.84 -1.6
130,438 + +0.7
130,460 - Dsui_0130 0.88 -1.2
130,461 - Dsui_0130 0.88 -1.3
130,631 - -1.2
130,660 - -1.2
130,660 - -1.9
130,677 - -1.5
130,699 + -2.6
130,714 + +0.7
130,722 - -1.9
130,732 - -1.6
130,741 + +0.7
130,781 + -0.9
130,791 + +0.7
130,799 - +0.7
130,799 - -0.9
130,815 + +0.7
130,823 - -0.3
130,823 - -1.3
130,823 - -0.3
130,823 - -0.9
130,829 - +0.7
130,834 + -1.4
130,842 - -0.3
130,878 + -1.1
130,879 + -1.2
130,886 - -0.9
130,887 - -1.9
130,955 + -1.2
131,012 - +0.7
131,037 - -2.3
131,054 + -1.0
131,057 - +0.7
131,062 - +0.7
131,089 + -1.2
131,093 + -0.9
131,099 + -0.9
131,099 + -1.0
131,122 + -1.2
131,172 - +0.7
131,175 + -1.6
131,175 + -1.4
131,175 + -1.0
131,175 + -1.8
131,183 - -0.9
131,183 - +0.7
131,183 - -0.9
131,199 - -0.3
131,201 + -1.6
131,201 + -1.1
131,211 + -0.4
131,211 + -1.3
131,229 + -1.4
131,236 + -1.5
131,247 + -3.7
131,273 + -1.9
131,277 + -1.2
131,277 + -1.6
131,277 + -1.7
131,277 + -2.1
131,277 + +0.2
131,277 + -2.0
131,285 - +0.7
131,285 - +0.7
131,285 - -2.1
131,285 - -1.3
131,285 - +0.7
131,285 - +0.7
131,285 - +0.7
131,291 + -1.8
131,309 + -2.2
131,309 + -1.6
131,339 - +0.7
131,364 + -1.2
131,372 - Dsui_0131 0.10 +0.7
131,396 - +0.7
131,408 + Dsui_0131 0.12 -1.7
131,408 + Dsui_0131 0.12 -1.8
131,416 - Dsui_0131 0.12 +0.7
131,417 + Dsui_0131 0.12 -1.4
131,422 + Dsui_0131 0.13 -1.8
131,434 + Dsui_0131 0.13 -1.8
131,456 + Dsui_0131 0.15 -0.8
131,482 - Dsui_0131 0.16 -0.3
131,493 - +0.7
131,506 + Dsui_0131 0.17 -1.6
131,535 + Dsui_0131 0.19 -1.3
131,535 + Dsui_0131 0.19 -1.9
131,535 + Dsui_0131 0.19 -1.3
131,535 + Dsui_0131 0.19 -1.4
131,543 - Dsui_0131 0.19 -0.3
131,543 - Dsui_0131 0.19 +0.7
131,576 - Dsui_0131 0.21 -0.9
131,663 + Dsui_0131 0.26 -1.4
131,676 + Dsui_0131 0.26 -1.1
131,703 - Dsui_0131 0.28 +0.7
131,705 + Dsui_0131 0.28 -2.0
131,733 + Dsui_0131 0.29 -1.8
131,794 + Dsui_0131 0.33 -1.2
131,816 - Dsui_0131 0.34 +0.7
131,855 - Dsui_0131 0.36 -0.9
131,880 + Dsui_0131 0.37 -1.8
131,882 + Dsui_0131 0.37 -2.0
131,882 + Dsui_0131 0.37 -1.2
131,888 - Dsui_0131 0.38 -0.3
131,907 - Dsui_0131 0.39 +0.7
131,993 + Dsui_0131 0.43 -0.7
132,067 - Dsui_0131 0.47 -0.9
132,069 + Dsui_0131 0.48 -1.8
132,132 + Dsui_0131 0.51 -0.8
132,140 - Dsui_0131 0.51 +0.7
132,247 + Dsui_0131 0.57 -3.3
132,247 + Dsui_0131 0.57 -1.0
132,255 - Dsui_0131 0.58 +0.7
132,275 + Dsui_0131 0.59 -1.5
132,278 - Dsui_0131 0.59 +0.7
132,283 - Dsui_0131 0.59 +0.7
132,335 - Dsui_0131 0.62 +0.7
132,353 - Dsui_0131 0.63 +0.7
132,485 + Dsui_0131 0.70 -2.1
132,526 + Dsui_0131 0.72 -1.8
132,532 - Dsui_0131 0.72 -1.3
132,539 + Dsui_0131 0.73 -1.5
132,839 - Dsui_0131 0.89 +0.7
133,024 - -0.9
133,026 + -0.9
133,026 + -1.0
133,034 - +0.7
133,107 + +0.7
133,114 + -2.1
133,122 - +0.7
133,122 - -0.9
133,200 - +0.7
133,257 - -1.6
133,339 + Dsui_0132 0.17 -0.1
133,339 + Dsui_0132 0.17 -1.6
133,344 + Dsui_0132 0.17 -2.9
133,352 - Dsui_0132 0.18 +0.7
133,353 - Dsui_0132 0.18 -1.3
133,467 - Dsui_0132 0.28 -1.9
133,472 - Dsui_0132 0.28 -2.1
133,554 - +0.7
133,622 + Dsui_0132 0.41 -1.3
133,622 + Dsui_0132 0.41 -1.6
133,649 + Dsui_0132 0.43 -1.6
133,650 + Dsui_0132 0.44 -2.7
133,684 + Dsui_0132 0.46 -3.2
133,685 + Dsui_0132 0.47 -3.4
133,822 - Dsui_0132 0.58 -1.3
133,835 - Dsui_0132 0.59 -0.9
133,840 - Dsui_0132 0.60 -0.9
133,885 + +0.7
133,895 - Dsui_0132 0.65 +0.7
133,895 - Dsui_0132 0.65 -0.3
133,961 - Dsui_0132 0.70 +0.7
133,998 - Dsui_0132 0.74 -0.9

Or see this region's nucleotide sequence