Strain Fitness in Dechlorosoma suillum PS around Dsui_0093

Experiment: ALP with copper (II) chloride 0.6 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0091 and Dsui_0092 are separated by 23 nucleotidesDsui_0092 and Dsui_0093 overlap by 4 nucleotidesDsui_0093 and Dsui_0094 are separated by 122 nucleotidesDsui_0094 and Dsui_0095 are separated by 9 nucleotides Dsui_0091: Dsui_0091 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 89,961 to 91,115 _0091 Dsui_0092: Dsui_0092 - phosphoribosylaminoimidazole carboxylase, PurE protein, at 91,139 to 91,639 _0092 Dsui_0093: Dsui_0093 - 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase, at 91,636 to 92,490 _0093 Dsui_0094: Dsui_0094 - 2-oxoacid:ferredoxin oxidoreductase, gamma subunit, at 92,613 to 93,230 _0094 Dsui_0095: Dsui_0095 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 93,240 to 95,105 _0095 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1at 92.525 kb on + strandat 92.533 kb on - strandat 92.534 kb on - strandat 92.584 kb on - strandat 92.591 kb on - strandat 92.595 kb on - strandat 92.612 kb on - strandat 92.612 kb on - strandat 92.612 kb on - strandat 92.616 kb on + strandat 92.616 kb on + strandat 92.616 kb on + strandat 92.616 kb on + strandat 92.619 kb on - strandat 92.619 kb on - strandat 92.619 kb on - strandat 92.624 kb on - strandat 92.624 kb on - strandat 92.624 kb on - strandat 92.624 kb on - strandat 92.624 kb on - strandat 92.653 kb on - strandat 92.720 kb on + strandat 92.770 kb on + strand, within Dsui_0094at 92.777 kb on + strand, within Dsui_0094at 92.877 kb on - strand, within Dsui_0094at 92.908 kb on - strandat 92.908 kb on - strand, within Dsui_0094at 92.927 kb on + strand, within Dsui_0094at 92.935 kb on - strand, within Dsui_0094at 92.935 kb on - strand, within Dsui_0094at 92.935 kb on - strand, within Dsui_0094at 92.943 kb on - strand, within Dsui_0094at 92.994 kb on - strand, within Dsui_0094at 93.014 kb on + strandat 93.033 kb on + strandat 93.033 kb on + strand, within Dsui_0094at 93.041 kb on - strand, within Dsui_0094at 93.042 kb on - strand, within Dsui_0094at 93.050 kb on + strand, within Dsui_0094at 93.095 kb on + strand, within Dsui_0094at 93.127 kb on - strand, within Dsui_0094at 93.140 kb on - strand, within Dsui_0094at 93.291 kb on + strandat 93.386 kb on - strandat 93.432 kb on - strand, within Dsui_0095at 93.475 kb on + strand, within Dsui_0095at 93.484 kb on + strand, within Dsui_0095at 93.484 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
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92,525 + -0.3
92,533 - -0.6
92,534 - -0.5
92,584 - -0.3
92,591 - -1.3
92,595 - -0.3
92,612 - -0.3
92,612 - -2.5
92,612 - -0.9
92,616 + -0.3
92,616 + -2.3
92,616 + +0.7
92,616 + -0.6
92,619 - -0.9
92,619 - +0.7
92,619 - +0.7
92,624 - -0.9
92,624 - -1.9
92,624 - -1.6
92,624 - -0.9
92,624 - -0.9
92,653 - -0.9
92,720 + +0.7
92,770 + Dsui_0094 0.25 -1.3
92,777 + Dsui_0094 0.27 +0.7
92,877 - Dsui_0094 0.43 -0.3
92,908 - +0.7
92,908 - Dsui_0094 0.48 -0.3
92,927 + Dsui_0094 0.51 +0.7
92,935 - Dsui_0094 0.52 -2.1
92,935 - Dsui_0094 0.52 -0.9
92,935 - Dsui_0094 0.52 -1.6
92,943 - Dsui_0094 0.53 +0.7
92,994 - Dsui_0094 0.62 +0.7
93,014 + +0.7
93,033 + -1.3
93,033 + Dsui_0094 0.68 -0.3
93,041 - Dsui_0094 0.69 +0.7
93,042 - Dsui_0094 0.69 +0.7
93,050 + Dsui_0094 0.71 -2.1
93,095 + Dsui_0094 0.78 -0.9
93,127 - Dsui_0094 0.83 +0.7
93,140 - Dsui_0094 0.85 -1.6
93,291 + +0.7
93,386 - -0.9
93,432 - Dsui_0095 0.10 -0.3
93,475 + Dsui_0095 0.13 -1.6
93,484 + Dsui_0095 0.13 -0.3
93,484 + +0.7

Or see this region's nucleotide sequence