Experiment: ALP with copper (II) chloride 0.6 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0091 and Dsui_0092 are separated by 23 nucleotides Dsui_0092 and Dsui_0093 overlap by 4 nucleotides Dsui_0093 and Dsui_0094 are separated by 122 nucleotides Dsui_0094 and Dsui_0095 are separated by 9 nucleotides
Dsui_0091: Dsui_0091 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 89,961 to 91,115
_0091
Dsui_0092: Dsui_0092 - phosphoribosylaminoimidazole carboxylase, PurE protein, at 91,139 to 91,639
_0092
Dsui_0093: Dsui_0093 - 5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase, at 91,636 to 92,490
_0093
Dsui_0094: Dsui_0094 - 2-oxoacid:ferredoxin oxidoreductase, gamma subunit, at 92,613 to 93,230
_0094
Dsui_0095: Dsui_0095 - indolepyruvate ferredoxin oxidreductase, alpha/beta subunit, at 93,240 to 95,105
_0095
Position (kb)
91
92
93 Strain fitness (log2 ratio)
-2
-1
0
1 at 92.525 kb on + strand at 92.533 kb on - strand at 92.534 kb on - strand at 92.584 kb on - strand at 92.591 kb on - strand at 92.595 kb on - strand at 92.612 kb on - strand at 92.612 kb on - strand at 92.612 kb on - strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.616 kb on + strand at 92.619 kb on - strand at 92.619 kb on - strand at 92.619 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.624 kb on - strand at 92.653 kb on - strand at 92.720 kb on + strand at 92.770 kb on + strand, within Dsui_0094 at 92.777 kb on + strand, within Dsui_0094 at 92.877 kb on - strand, within Dsui_0094 at 92.908 kb on - strand at 92.908 kb on - strand, within Dsui_0094 at 92.927 kb on + strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.935 kb on - strand, within Dsui_0094 at 92.943 kb on - strand, within Dsui_0094 at 92.994 kb on - strand, within Dsui_0094 at 93.014 kb on + strand at 93.033 kb on + strand at 93.033 kb on + strand, within Dsui_0094 at 93.041 kb on - strand, within Dsui_0094 at 93.042 kb on - strand, within Dsui_0094 at 93.050 kb on + strand, within Dsui_0094 at 93.095 kb on + strand, within Dsui_0094 at 93.127 kb on - strand, within Dsui_0094 at 93.140 kb on - strand, within Dsui_0094 at 93.291 kb on + strand at 93.386 kb on - strand at 93.432 kb on - strand, within Dsui_0095 at 93.475 kb on + strand, within Dsui_0095 at 93.484 kb on + strand, within Dsui_0095 at 93.484 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM remove 92,525 + -0.3 92,533 - -0.6 92,534 - -0.5 92,584 - -0.3 92,591 - -1.3 92,595 - -0.3 92,612 - -0.3 92,612 - -2.5 92,612 - -0.9 92,616 + -0.3 92,616 + -2.3 92,616 + +0.7 92,616 + -0.6 92,619 - -0.9 92,619 - +0.7 92,619 - +0.7 92,624 - -0.9 92,624 - -1.9 92,624 - -1.6 92,624 - -0.9 92,624 - -0.9 92,653 - -0.9 92,720 + +0.7 92,770 + Dsui_0094 0.25 -1.3 92,777 + Dsui_0094 0.27 +0.7 92,877 - Dsui_0094 0.43 -0.3 92,908 - +0.7 92,908 - Dsui_0094 0.48 -0.3 92,927 + Dsui_0094 0.51 +0.7 92,935 - Dsui_0094 0.52 -2.1 92,935 - Dsui_0094 0.52 -0.9 92,935 - Dsui_0094 0.52 -1.6 92,943 - Dsui_0094 0.53 +0.7 92,994 - Dsui_0094 0.62 +0.7 93,014 + +0.7 93,033 + -1.3 93,033 + Dsui_0094 0.68 -0.3 93,041 - Dsui_0094 0.69 +0.7 93,042 - Dsui_0094 0.69 +0.7 93,050 + Dsui_0094 0.71 -2.1 93,095 + Dsui_0094 0.78 -0.9 93,127 - Dsui_0094 0.83 +0.7 93,140 - Dsui_0094 0.85 -1.6 93,291 + +0.7 93,386 - -0.9 93,432 - Dsui_0095 0.10 -0.3 93,475 + Dsui_0095 0.13 -1.6 93,484 + Dsui_0095 0.13 -0.3 93,484 + +0.7
Or see this region's nucleotide sequence