Strain Fitness in Dechlorosoma suillum PS around Dsui_0049

Experiment: ALP with copper (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0048 and Dsui_0049 are separated by 43 nucleotidesDsui_0049 and Dsui_0050 are separated by 69 nucleotides Dsui_0048: Dsui_0048 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 44,684 to 45,622 _0048 Dsui_0049: Dsui_0049 - uncharacterized membrane-anchored protein, at 45,666 to 46,976 _0049 Dsui_0050: Dsui_0050 - fructose-bisphosphate aldolase, class II, Calvin cycle subtype, at 47,046 to 48,110 _0050 Position (kb) 45 46 47Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 44.701 kb on - strandat 45.632 kb on - strandat 45.666 kb on + strandat 45.681 kb on - strandat 45.681 kb on - strandat 45.802 kb on + strand, within Dsui_0049at 45.802 kb on + strandat 45.802 kb on + strandat 45.802 kb on + strandat 45.810 kb on - strand, within Dsui_0049at 45.810 kb on - strand, within Dsui_0049at 45.812 kb on + strand, within Dsui_0049at 45.822 kb on - strand, within Dsui_0049at 45.822 kb on - strand, within Dsui_0049at 45.863 kb on + strand, within Dsui_0049at 45.866 kb on + strand, within Dsui_0049at 45.907 kb on - strand, within Dsui_0049at 46.044 kb on + strand, within Dsui_0049at 46.052 kb on - strand, within Dsui_0049at 46.306 kb on + strand, within Dsui_0049at 46.323 kb on + strand, within Dsui_0049at 46.389 kb on + strand, within Dsui_0049at 46.416 kb on - strand, within Dsui_0049at 46.607 kb on + strand, within Dsui_0049at 46.646 kb on + strand, within Dsui_0049at 46.664 kb on + strand, within Dsui_0049at 46.694 kb on + strand, within Dsui_0049at 46.735 kb on - strand, within Dsui_0049at 46.735 kb on - strand, within Dsui_0049at 46.770 kb on - strand, within Dsui_0049at 46.810 kb on + strand, within Dsui_0049at 46.903 kb on - strandat 46.917 kb on + strandat 46.925 kb on - strandat 46.965 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
remove
44,701 - -0.6
45,632 - -2.1
45,666 + -0.3
45,681 - -2.5
45,681 - -1.8
45,802 + Dsui_0049 0.10 +0.7
45,802 + -0.3
45,802 + -0.3
45,802 + +0.7
45,810 - Dsui_0049 0.11 -0.2
45,810 - Dsui_0049 0.11 -1.9
45,812 + Dsui_0049 0.11 +0.7
45,822 - Dsui_0049 0.12 -3.8
45,822 - Dsui_0049 0.12 -1.7
45,863 + Dsui_0049 0.15 +0.7
45,866 + Dsui_0049 0.15 -0.3
45,907 - Dsui_0049 0.18 -0.6
46,044 + Dsui_0049 0.29 +0.7
46,052 - Dsui_0049 0.29 -1.6
46,306 + Dsui_0049 0.49 -2.1
46,323 + Dsui_0049 0.50 -2.6
46,389 + Dsui_0049 0.55 -0.9
46,416 - Dsui_0049 0.57 -2.1
46,607 + Dsui_0049 0.72 -0.3
46,646 + Dsui_0049 0.75 +0.7
46,664 + Dsui_0049 0.76 -0.3
46,694 + Dsui_0049 0.78 +0.7
46,735 - Dsui_0049 0.82 -1.5
46,735 - Dsui_0049 0.82 -1.5
46,770 - Dsui_0049 0.84 -3.9
46,810 + Dsui_0049 0.87 -0.3
46,903 - -1.4
46,917 + +0.7
46,925 - -0.7
46,965 + +0.7

Or see this region's nucleotide sequence