Strain Fitness in Dechlorosoma suillum PS around Dsui_0036

Experiment: ALP with copper (II) chloride 0.6 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0035 and Dsui_0036 are separated by 115 nucleotidesDsui_0036 and Dsui_0037 are separated by 86 nucleotides Dsui_0035: Dsui_0035 - ankyrin repeat-containing protein, at 31,805 to 32,854 _0035 Dsui_0036: Dsui_0036 - TonB family protein, at 32,970 to 33,542 _0036 Dsui_0037: Dsui_0037 - putative acyl-CoA transferase/carnitine dehydratase, at 33,629 to 34,840 _0037 Position (kb) 32 33 34Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 32.118 kb on - strand, within Dsui_0035at 32.129 kb on - strand, within Dsui_0035at 32.187 kb on - strand, within Dsui_0035at 32.206 kb on + strand, within Dsui_0035at 32.207 kb on + strandat 32.210 kb on - strand, within Dsui_0035at 32.210 kb on - strand, within Dsui_0035at 32.215 kb on - strandat 32.215 kb on - strand, within Dsui_0035at 32.215 kb on - strand, within Dsui_0035at 32.230 kb on - strand, within Dsui_0035at 32.280 kb on - strand, within Dsui_0035at 32.282 kb on + strand, within Dsui_0035at 32.332 kb on - strand, within Dsui_0035at 32.433 kb on + strandat 32.477 kb on + strandat 32.486 kb on + strand, within Dsui_0035at 32.618 kb on - strand, within Dsui_0035at 32.660 kb on + strandat 32.671 kb on + strandat 32.671 kb on + strandat 32.758 kb on - strandat 32.834 kb on - strandat 33.188 kb on + strand, within Dsui_0036at 33.188 kb on + strand, within Dsui_0036at 33.261 kb on - strand, within Dsui_0036at 33.273 kb on - strand, within Dsui_0036at 33.332 kb on + strand, within Dsui_0036at 33.353 kb on - strand, within Dsui_0036at 33.551 kb on + strandat 33.559 kb on - strandat 33.671 kb on + strandat 33.715 kb on + strandat 33.786 kb on - strand, within Dsui_0037at 33.851 kb on + strandat 33.871 kb on + strand, within Dsui_0037at 33.895 kb on + strandat 33.918 kb on + strand, within Dsui_0037at 33.930 kb on - strand, within Dsui_0037at 33.962 kb on - strand, within Dsui_0037at 34.171 kb on - strand, within Dsui_0037at 34.182 kb on + strand, within Dsui_0037at 34.190 kb on + strand, within Dsui_0037at 34.225 kb on - strand, within Dsui_0037at 34.225 kb on - strand, within Dsui_0037at 34.237 kb on - strand, within Dsui_0037at 34.238 kb on - strand, within Dsui_0037at 34.242 kb on + strand, within Dsui_0037at 34.275 kb on + strand, within Dsui_0037at 34.297 kb on + strand, within Dsui_0037at 34.306 kb on - strandat 34.428 kb on + strand, within Dsui_0037at 34.436 kb on - strand, within Dsui_0037at 34.461 kb on - strand, within Dsui_0037at 34.476 kb on - strand, within Dsui_0037at 34.482 kb on - strand, within Dsui_0037

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with copper (II) chloride 0.6 mM
remove
32,118 - Dsui_0035 0.30 -1.3
32,129 - Dsui_0035 0.31 -0.1
32,187 - Dsui_0035 0.36 -0.9
32,206 + Dsui_0035 0.38 -0.9
32,207 + +0.7
32,210 - Dsui_0035 0.39 -2.1
32,210 - Dsui_0035 0.39 -2.5
32,215 - -1.9
32,215 - Dsui_0035 0.39 -3.7
32,215 - Dsui_0035 0.39 -1.9
32,230 - Dsui_0035 0.40 -2.3
32,280 - Dsui_0035 0.45 -2.5
32,282 + Dsui_0035 0.45 -1.9
32,332 - Dsui_0035 0.50 -1.0
32,433 + +0.7
32,477 + +0.7
32,486 + Dsui_0035 0.65 -0.3
32,618 - Dsui_0035 0.77 -1.2
32,660 + -1.3
32,671 + +0.7
32,671 + -1.3
32,758 - +2.7
32,834 - -2.6
33,188 + Dsui_0036 0.38 -3.7
33,188 + Dsui_0036 0.38 -4.3
33,261 - Dsui_0036 0.51 -0.9
33,273 - Dsui_0036 0.53 -0.9
33,332 + Dsui_0036 0.63 -2.9
33,353 - Dsui_0036 0.67 -4.6
33,551 + +0.7
33,559 - -1.7
33,671 + -0.3
33,715 + +0.7
33,786 - Dsui_0037 0.13 -1.6
33,851 + +0.7
33,871 + Dsui_0037 0.20 -1.5
33,895 + +0.7
33,918 + Dsui_0037 0.24 -0.3
33,930 - Dsui_0037 0.25 -2.1
33,962 - Dsui_0037 0.27 -1.6
34,171 - Dsui_0037 0.45 -2.9
34,182 + Dsui_0037 0.46 -3.1
34,190 + Dsui_0037 0.46 -2.1
34,225 - Dsui_0037 0.49 +0.7
34,225 - Dsui_0037 0.49 +0.7
34,237 - Dsui_0037 0.50 -0.3
34,238 - Dsui_0037 0.50 -2.1
34,242 + Dsui_0037 0.51 -1.3
34,275 + Dsui_0037 0.53 -1.3
34,297 + Dsui_0037 0.55 -0.3
34,306 - +0.7
34,428 + Dsui_0037 0.66 -0.9
34,436 - Dsui_0037 0.67 +0.7
34,461 - Dsui_0037 0.69 -0.3
34,476 - Dsui_0037 0.70 -1.6
34,482 - Dsui_0037 0.70 -1.0

Or see this region's nucleotide sequence