Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18405

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18395 and BWI76_RS18400 are separated by 107 nucleotidesBWI76_RS18400 and BWI76_RS18405 are separated by 75 nucleotidesBWI76_RS18405 and BWI76_RS18410 are separated by 183 nucleotides BWI76_RS18395: BWI76_RS18395 - diguanylate cyclase, at 3,817,280 to 3,818,947 _RS18395 BWI76_RS18400: BWI76_RS18400 - DUF2158 domain-containing protein, at 3,819,055 to 3,819,234 _RS18400 BWI76_RS18405: BWI76_RS18405 - hypothetical protein, at 3,819,310 to 3,820,221 _RS18405 BWI76_RS18410: BWI76_RS18410 - drug/metabolite exporter YedA, at 3,820,405 to 3,821,316 _RS18410 Position (kb) 3819 3820 3821Strain fitness (log2 ratio) -2 -1 0 1 2at 3818.316 kb on + strand, within BWI76_RS18395at 3818.324 kb on - strand, within BWI76_RS18395at 3818.508 kb on + strand, within BWI76_RS18395at 3818.672 kb on - strand, within BWI76_RS18395at 3818.672 kb on - strand, within BWI76_RS18395at 3818.808 kb on - strandat 3819.140 kb on - strand, within BWI76_RS18400at 3819.409 kb on - strand, within BWI76_RS18405at 3819.476 kb on - strand, within BWI76_RS18405at 3819.476 kb on - strand, within BWI76_RS18405at 3819.476 kb on - strand, within BWI76_RS18405at 3819.783 kb on + strand, within BWI76_RS18405at 3820.064 kb on + strand, within BWI76_RS18405at 3820.089 kb on + strand, within BWI76_RS18405at 3820.089 kb on + strand, within BWI76_RS18405at 3820.117 kb on + strand, within BWI76_RS18405at 3820.198 kb on + strandat 3820.206 kb on - strandat 3820.390 kb on - strandat 3820.679 kb on + strand, within BWI76_RS18410at 3820.848 kb on + strand, within BWI76_RS18410at 3820.848 kb on + strand, within BWI76_RS18410at 3820.848 kb on + strand, within BWI76_RS18410at 3820.848 kb on + strand, within BWI76_RS18410at 3821.203 kb on + strand, within BWI76_RS18410

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,818,316 + BWI76_RS18395 0.62 -0.0
3,818,324 - BWI76_RS18395 0.63 +0.3
3,818,508 + BWI76_RS18395 0.74 -0.3
3,818,672 - BWI76_RS18395 0.83 -0.3
3,818,672 - BWI76_RS18395 0.83 +1.2
3,818,808 - +0.3
3,819,140 - BWI76_RS18400 0.47 -0.4
3,819,409 - BWI76_RS18405 0.11 -0.0
3,819,476 - BWI76_RS18405 0.18 +0.4
3,819,476 - BWI76_RS18405 0.18 +2.2
3,819,476 - BWI76_RS18405 0.18 +0.2
3,819,783 + BWI76_RS18405 0.52 -0.4
3,820,064 + BWI76_RS18405 0.83 +0.3
3,820,089 + BWI76_RS18405 0.85 -0.0
3,820,089 + BWI76_RS18405 0.85 +0.6
3,820,117 + BWI76_RS18405 0.88 +1.0
3,820,198 + -0.7
3,820,206 - -0.5
3,820,390 - +0.7
3,820,679 + BWI76_RS18410 0.30 +2.0
3,820,848 + BWI76_RS18410 0.49 -0.1
3,820,848 + BWI76_RS18410 0.49 -0.1
3,820,848 + BWI76_RS18410 0.49 +0.1
3,820,848 + BWI76_RS18410 0.49 +0.2
3,821,203 + BWI76_RS18410 0.88 -1.9

Or see this region's nucleotide sequence