Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13860

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13850 and BWI76_RS13855 are separated by 79 nucleotidesBWI76_RS13855 and BWI76_RS13860 are separated by 115 nucleotidesBWI76_RS13860 and BWI76_RS13865 are separated by 197 nucleotides BWI76_RS13850: BWI76_RS13850 - N-acetyltransferase, at 2,889,237 to 2,889,716 _RS13850 BWI76_RS13855: BWI76_RS13855 - peroxiredoxin, at 2,889,796 to 2,890,227 _RS13855 BWI76_RS13860: BWI76_RS13860 - hypothetical protein, at 2,890,343 to 2,891,212 _RS13860 BWI76_RS13865: BWI76_RS13865 - cation diffusion facilitator family transporter, at 2,891,410 to 2,892,318 _RS13865 Position (kb) 2890 2891 2892Strain fitness (log2 ratio) -2 -1 0 1 2at 2889.458 kb on + strand, within BWI76_RS13850at 2889.509 kb on - strand, within BWI76_RS13850at 2889.546 kb on + strand, within BWI76_RS13850at 2889.654 kb on - strand, within BWI76_RS13850at 2889.718 kb on - strandat 2889.763 kb on - strandat 2889.919 kb on + strand, within BWI76_RS13855at 2889.989 kb on + strand, within BWI76_RS13855at 2890.008 kb on + strand, within BWI76_RS13855at 2890.215 kb on + strandat 2890.256 kb on + strandat 2890.423 kb on + strandat 2890.608 kb on - strand, within BWI76_RS13860at 2890.779 kb on + strand, within BWI76_RS13860at 2890.787 kb on - strand, within BWI76_RS13860at 2891.019 kb on - strand, within BWI76_RS13860at 2891.077 kb on - strand, within BWI76_RS13860at 2891.097 kb on + strand, within BWI76_RS13860at 2891.097 kb on + strand, within BWI76_RS13860at 2891.097 kb on + strand, within BWI76_RS13860at 2891.105 kb on - strand, within BWI76_RS13860at 2891.105 kb on - strand, within BWI76_RS13860at 2891.107 kb on + strand, within BWI76_RS13860at 2891.131 kb on + strandat 2891.137 kb on - strandat 2891.139 kb on - strandat 2891.142 kb on + strandat 2891.154 kb on + strandat 2891.154 kb on + strandat 2891.160 kb on - strandat 2891.160 kb on - strandat 2891.162 kb on - strandat 2891.164 kb on + strandat 2891.164 kb on + strandat 2891.167 kb on + strandat 2891.167 kb on + strandat 2891.174 kb on + strandat 2891.174 kb on + strandat 2891.174 kb on + strandat 2891.174 kb on + strandat 2891.174 kb on + strandat 2891.175 kb on - strandat 2891.179 kb on + strandat 2891.180 kb on - strandat 2891.182 kb on - strandat 2891.184 kb on + strandat 2891.186 kb on + strandat 2891.187 kb on - strandat 2891.195 kb on - strandat 2891.195 kb on - strandat 2891.240 kb on - strandat 2891.381 kb on - strandat 2891.430 kb on + strandat 2891.438 kb on + strandat 2891.446 kb on - strandat 2891.456 kb on + strandat 2891.461 kb on + strandat 2891.466 kb on + strandat 2891.500 kb on + strandat 2891.506 kb on - strandat 2891.511 kb on + strand, within BWI76_RS13865at 2891.627 kb on - strand, within BWI76_RS13865at 2891.628 kb on - strand, within BWI76_RS13865at 2891.637 kb on + strand, within BWI76_RS13865at 2891.645 kb on - strand, within BWI76_RS13865at 2891.653 kb on - strand, within BWI76_RS13865at 2891.701 kb on - strand, within BWI76_RS13865at 2891.723 kb on - strand, within BWI76_RS13865at 2891.783 kb on + strand, within BWI76_RS13865at 2891.858 kb on + strand, within BWI76_RS13865at 2892.000 kb on - strand, within BWI76_RS13865at 2892.004 kb on - strand, within BWI76_RS13865at 2892.015 kb on - strand, within BWI76_RS13865at 2892.015 kb on - strand, within BWI76_RS13865at 2892.058 kb on - strand, within BWI76_RS13865at 2892.115 kb on - strand, within BWI76_RS13865at 2892.115 kb on - strand, within BWI76_RS13865at 2892.171 kb on + strand, within BWI76_RS13865

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,889,458 + BWI76_RS13850 0.46 +0.3
2,889,509 - BWI76_RS13850 0.57 -0.2
2,889,546 + BWI76_RS13850 0.64 -0.0
2,889,654 - BWI76_RS13850 0.87 +0.1
2,889,718 - +0.4
2,889,763 - -1.0
2,889,919 + BWI76_RS13855 0.28 +0.3
2,889,989 + BWI76_RS13855 0.45 +0.0
2,890,008 + BWI76_RS13855 0.49 +0.4
2,890,215 + +0.4
2,890,256 + +0.1
2,890,423 + -0.9
2,890,608 - BWI76_RS13860 0.30 -1.5
2,890,779 + BWI76_RS13860 0.50 -0.0
2,890,787 - BWI76_RS13860 0.51 -0.8
2,891,019 - BWI76_RS13860 0.78 -1.4
2,891,077 - BWI76_RS13860 0.84 +0.7
2,891,097 + BWI76_RS13860 0.87 -0.5
2,891,097 + BWI76_RS13860 0.87 -2.5
2,891,097 + BWI76_RS13860 0.87 -0.3
2,891,105 - BWI76_RS13860 0.88 -0.2
2,891,105 - BWI76_RS13860 0.88 -0.6
2,891,107 + BWI76_RS13860 0.88 -0.3
2,891,131 + +1.0
2,891,137 - +0.7
2,891,139 - -0.1
2,891,142 + -0.6
2,891,154 + +0.4
2,891,154 + -0.9
2,891,160 - -1.7
2,891,160 - +0.3
2,891,162 - -0.2
2,891,164 + -0.1
2,891,164 + -0.4
2,891,167 + +1.2
2,891,167 + -0.9
2,891,174 + +0.2
2,891,174 + -0.4
2,891,174 + +0.4
2,891,174 + -1.3
2,891,174 + +1.1
2,891,175 - +1.5
2,891,179 + -0.1
2,891,180 - -1.1
2,891,182 - -0.5
2,891,184 + -0.8
2,891,186 + +0.2
2,891,187 - +0.4
2,891,195 - +1.1
2,891,195 - +1.6
2,891,240 - +1.8
2,891,381 - -0.5
2,891,430 + +0.2
2,891,438 + +0.2
2,891,446 - -0.1
2,891,456 + +1.0
2,891,461 + -0.0
2,891,466 + +0.5
2,891,500 + -1.6
2,891,506 - +0.1
2,891,511 + BWI76_RS13865 0.11 +0.0
2,891,627 - BWI76_RS13865 0.24 -0.3
2,891,628 - BWI76_RS13865 0.24 -0.9
2,891,637 + BWI76_RS13865 0.25 -0.1
2,891,645 - BWI76_RS13865 0.26 -0.1
2,891,653 - BWI76_RS13865 0.27 -0.3
2,891,701 - BWI76_RS13865 0.32 +0.1
2,891,723 - BWI76_RS13865 0.34 +0.5
2,891,783 + BWI76_RS13865 0.41 +0.2
2,891,858 + BWI76_RS13865 0.49 +0.0
2,892,000 - BWI76_RS13865 0.65 +0.1
2,892,004 - BWI76_RS13865 0.65 -0.1
2,892,015 - BWI76_RS13865 0.67 -1.6
2,892,015 - BWI76_RS13865 0.67 -0.7
2,892,058 - BWI76_RS13865 0.71 -1.7
2,892,115 - BWI76_RS13865 0.78 -0.5
2,892,115 - BWI76_RS13865 0.78 -0.3
2,892,171 + BWI76_RS13865 0.84 -2.1

Or see this region's nucleotide sequence