Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS10550 and BWI76_RS10555 overlap by 4 nucleotides BWI76_RS10555 and BWI76_RS10560 are separated by 9 nucleotides BWI76_RS10560 and BWI76_RS10565 are separated by 168 nucleotides
BWI76_RS10550: BWI76_RS10550 - AtzE family amidohydrolase, at 2,228,472 to 2,229,869
_RS10550
BWI76_RS10555: BWI76_RS10555 - hypothetical protein, at 2,229,866 to 2,230,054
_RS10555
BWI76_RS10560: BWI76_RS10560 - gamma-glutamyltransferase, at 2,230,064 to 2,231,647
_RS10560
BWI76_RS10565: BWI76_RS10565 - sugar isomerase, at 2,231,816 to 2,232,655
_RS10565
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-2
-1
0
1 at 2229.082 kb on + strand, within BWI76_RS10550 at 2229.087 kb on + strand, within BWI76_RS10550 at 2229.203 kb on + strand, within BWI76_RS10550 at 2230.028 kb on - strand, within BWI76_RS10555 at 2230.180 kb on + strand at 2230.188 kb on - strand at 2230.907 kb on - strand, within BWI76_RS10560 at 2230.999 kb on + strand, within BWI76_RS10560 at 2231.062 kb on + strand, within BWI76_RS10560 at 2231.079 kb on + strand, within BWI76_RS10560 at 2231.594 kb on + strand at 2231.926 kb on - strand, within BWI76_RS10565 at 2232.085 kb on - strand, within BWI76_RS10565 at 2232.153 kb on + strand, within BWI76_RS10565 at 2232.155 kb on - strand, within BWI76_RS10565 at 2232.228 kb on - strand, within BWI76_RS10565 at 2232.320 kb on + strand, within BWI76_RS10565
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 2,229,082 + BWI76_RS10550 0.44 -0.0 2,229,087 + BWI76_RS10550 0.44 -1.2 2,229,203 + BWI76_RS10550 0.52 -0.1 2,230,028 - BWI76_RS10555 0.86 -2.1 2,230,180 + -0.3 2,230,188 - -0.0 2,230,907 - BWI76_RS10560 0.53 -0.4 2,230,999 + BWI76_RS10560 0.59 +1.2 2,231,062 + BWI76_RS10560 0.63 +0.3 2,231,079 + BWI76_RS10560 0.64 +1.1 2,231,594 + -0.6 2,231,926 - BWI76_RS10565 0.13 +0.2 2,232,085 - BWI76_RS10565 0.32 +0.2 2,232,153 + BWI76_RS10565 0.40 -0.1 2,232,155 - BWI76_RS10565 0.40 -1.3 2,232,228 - BWI76_RS10565 0.49 +0.2 2,232,320 + BWI76_RS10565 0.60 -1.3
Or see this region's nucleotide sequence