Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS28075

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS28060 and AZOBR_RS28065 are separated by 22 nucleotidesAZOBR_RS28065 and AZOBR_RS28070 overlap by 4 nucleotidesAZOBR_RS28070 and AZOBR_RS28075 are separated by 7 nucleotidesAZOBR_RS28075 and AZOBR_RS28080 are separated by 121 nucleotides AZOBR_RS28060: AZOBR_RS28060 - hypothetical protein, at 463,944 to 464,495 _RS28060 AZOBR_RS28065: AZOBR_RS28065 - hypothetical protein, at 464,518 to 464,835 _RS28065 AZOBR_RS28070: AZOBR_RS28070 - hypothetical protein, at 464,832 to 465,290 _RS28070 AZOBR_RS28075: AZOBR_RS28075 - membrane protein, at 465,298 to 466,434 _RS28075 AZOBR_RS28080: AZOBR_RS28080 - GntR family transcriptional regulator, at 466,556 to 467,281 _RS28080 Position (kb) 465 466 467Strain fitness (log2 ratio) -2 -1 0 1 2at 464.520 kb on - strandat 464.520 kb on - strandat 464.579 kb on + strand, within AZOBR_RS28065at 464.579 kb on + strand, within AZOBR_RS28065at 464.579 kb on + strand, within AZOBR_RS28065at 464.579 kb on + strand, within AZOBR_RS28065at 464.580 kb on - strand, within AZOBR_RS28065at 464.580 kb on - strand, within AZOBR_RS28065at 464.580 kb on - strand, within AZOBR_RS28065at 464.580 kb on - strand, within AZOBR_RS28065at 464.762 kb on + strand, within AZOBR_RS28065at 465.080 kb on - strand, within AZOBR_RS28070at 465.136 kb on - strand, within AZOBR_RS28070at 465.285 kb on - strandat 465.285 kb on - strandat 465.569 kb on + strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.570 kb on - strand, within AZOBR_RS28075at 465.623 kb on + strand, within AZOBR_RS28075at 465.624 kb on - strand, within AZOBR_RS28075at 465.624 kb on - strand, within AZOBR_RS28075at 465.648 kb on - strand, within AZOBR_RS28075at 465.806 kb on + strand, within AZOBR_RS28075at 465.806 kb on + strand, within AZOBR_RS28075at 465.807 kb on - strand, within AZOBR_RS28075at 465.807 kb on - strand, within AZOBR_RS28075at 465.932 kb on + strand, within AZOBR_RS28075at 465.933 kb on - strand, within AZOBR_RS28075at 465.933 kb on - strand, within AZOBR_RS28075at 465.956 kb on + strand, within AZOBR_RS28075at 465.957 kb on - strand, within AZOBR_RS28075at 466.016 kb on + strand, within AZOBR_RS28075at 466.017 kb on - strand, within AZOBR_RS28075at 466.788 kb on + strand, within AZOBR_RS28080

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
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464,520 - +0.3
464,520 - -0.3
464,579 + AZOBR_RS28065 0.19 -0.4
464,579 + AZOBR_RS28065 0.19 -0.6
464,579 + AZOBR_RS28065 0.19 +0.5
464,579 + AZOBR_RS28065 0.19 -0.2
464,580 - AZOBR_RS28065 0.19 -2.0
464,580 - AZOBR_RS28065 0.19 +0.3
464,580 - AZOBR_RS28065 0.19 -0.7
464,580 - AZOBR_RS28065 0.19 +0.5
464,762 + AZOBR_RS28065 0.77 -0.1
465,080 - AZOBR_RS28070 0.54 +0.2
465,136 - AZOBR_RS28070 0.66 -0.1
465,285 - +0.3
465,285 - +0.1
465,569 + AZOBR_RS28075 0.24 +0.6
465,570 - AZOBR_RS28075 0.24 -0.8
465,570 - AZOBR_RS28075 0.24 -0.2
465,570 - AZOBR_RS28075 0.24 +2.2
465,570 - AZOBR_RS28075 0.24 +1.0
465,570 - AZOBR_RS28075 0.24 -0.1
465,570 - AZOBR_RS28075 0.24 -0.4
465,623 + AZOBR_RS28075 0.29 +0.5
465,624 - AZOBR_RS28075 0.29 +0.1
465,624 - AZOBR_RS28075 0.29 -0.3
465,648 - AZOBR_RS28075 0.31 +0.2
465,806 + AZOBR_RS28075 0.45 -1.5
465,806 + AZOBR_RS28075 0.45 +0.1
465,807 - AZOBR_RS28075 0.45 +0.2
465,807 - AZOBR_RS28075 0.45 +0.4
465,932 + AZOBR_RS28075 0.56 +0.5
465,933 - AZOBR_RS28075 0.56 +0.6
465,933 - AZOBR_RS28075 0.56 -0.2
465,956 + AZOBR_RS28075 0.58 -0.2
465,957 - AZOBR_RS28075 0.58 +1.1
466,016 + AZOBR_RS28075 0.63 +0.4
466,017 - AZOBR_RS28075 0.63 +1.3
466,788 + AZOBR_RS28080 0.32 +1.3

Or see this region's nucleotide sequence