Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24735

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24725 and AZOBR_RS24730 are separated by 118 nucleotidesAZOBR_RS24730 and AZOBR_RS24735 are separated by 197 nucleotidesAZOBR_RS24735 and AZOBR_RS24740 are separated by 519 nucleotides AZOBR_RS24725: AZOBR_RS24725 - hypothetical protein, at 599,988 to 601,172 _RS24725 AZOBR_RS24730: AZOBR_RS24730 - hypothetical protein, at 601,291 to 601,473 _RS24730 AZOBR_RS24735: AZOBR_RS24735 - hypothetical protein, at 601,671 to 605,441 _RS24735 AZOBR_RS24740: AZOBR_RS24740 - peroxiredoxin, at 605,961 to 606,386 _RS24740 Position (kb) 601 602 603 604 605 606Strain fitness (log2 ratio) -2 -1 0 1 2 3at 600.847 kb on - strand, within AZOBR_RS24725at 600.847 kb on - strandat 600.847 kb on - strand, within AZOBR_RS24725at 601.051 kb on - strand, within AZOBR_RS24725at 601.322 kb on + strand, within AZOBR_RS24730at 601.322 kb on + strand, within AZOBR_RS24730at 602.212 kb on + strand, within AZOBR_RS24735at 602.212 kb on + strand, within AZOBR_RS24735at 602.212 kb on + strand, within AZOBR_RS24735at 602.212 kb on + strand, within AZOBR_RS24735at 602.213 kb on - strand, within AZOBR_RS24735at 602.213 kb on - strand, within AZOBR_RS24735at 602.213 kb on - strand, within AZOBR_RS24735at 602.302 kb on + strand, within AZOBR_RS24735at 602.302 kb on + strand, within AZOBR_RS24735at 602.302 kb on + strand, within AZOBR_RS24735at 602.303 kb on - strand, within AZOBR_RS24735at 602.360 kb on - strand, within AZOBR_RS24735at 602.395 kb on + strand, within AZOBR_RS24735at 602.477 kb on - strand, within AZOBR_RS24735at 602.735 kb on - strand, within AZOBR_RS24735at 602.735 kb on - strand, within AZOBR_RS24735at 602.851 kb on + strand, within AZOBR_RS24735at 602.851 kb on + strand, within AZOBR_RS24735at 602.851 kb on + strand, within AZOBR_RS24735at 602.852 kb on - strand, within AZOBR_RS24735at 602.893 kb on + strand, within AZOBR_RS24735at 604.249 kb on + strand, within AZOBR_RS24735at 604.249 kb on + strand, within AZOBR_RS24735at 604.249 kb on + strand, within AZOBR_RS24735at 604.249 kb on + strand, within AZOBR_RS24735at 604.249 kb on + strand, within AZOBR_RS24735at 604.249 kb on + strand, within AZOBR_RS24735at 604.250 kb on - strand, within AZOBR_RS24735at 604.390 kb on + strand, within AZOBR_RS24735at 604.390 kb on + strand, within AZOBR_RS24735at 604.390 kb on + strand, within AZOBR_RS24735at 604.391 kb on - strand, within AZOBR_RS24735at 604.391 kb on - strand, within AZOBR_RS24735at 604.535 kb on + strand, within AZOBR_RS24735at 604.873 kb on + strand, within AZOBR_RS24735at 604.896 kb on + strand, within AZOBR_RS24735at 605.155 kb on + strandat 605.156 kb on - strandat 605.156 kb on - strandat 605.167 kb on + strandat 605.188 kb on + strandat 605.189 kb on - strandat 605.189 kb on - strandat 605.279 kb on - strandat 605.347 kb on + strandat 605.347 kb on + strandat 605.537 kb on + strandat 605.537 kb on + strandat 605.558 kb on + strandat 605.559 kb on - strandat 605.608 kb on + strandat 605.616 kb on + strandat 606.292 kb on + strand, within AZOBR_RS24740at 606.292 kb on + strand, within AZOBR_RS24740at 606.292 kb on + strand, within AZOBR_RS24740at 606.292 kb on + strand, within AZOBR_RS24740at 606.293 kb on - strand, within AZOBR_RS24740at 606.293 kb on - strand, within AZOBR_RS24740at 606.293 kb on - strand, within AZOBR_RS24740

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
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600,847 - AZOBR_RS24725 0.72 -0.0
600,847 - -1.0
600,847 - AZOBR_RS24725 0.72 +0.5
601,051 - AZOBR_RS24725 0.90 -0.2
601,322 + AZOBR_RS24730 0.17 +0.6
601,322 + AZOBR_RS24730 0.17 +0.3
602,212 + AZOBR_RS24735 0.14 -0.1
602,212 + AZOBR_RS24735 0.14 +1.0
602,212 + AZOBR_RS24735 0.14 +0.4
602,212 + AZOBR_RS24735 0.14 +0.8
602,213 - AZOBR_RS24735 0.14 +0.4
602,213 - AZOBR_RS24735 0.14 -0.2
602,213 - AZOBR_RS24735 0.14 -0.3
602,302 + AZOBR_RS24735 0.17 -0.6
602,302 + AZOBR_RS24735 0.17 +0.1
602,302 + AZOBR_RS24735 0.17 +0.9
602,303 - AZOBR_RS24735 0.17 -0.4
602,360 - AZOBR_RS24735 0.18 -0.4
602,395 + AZOBR_RS24735 0.19 +0.5
602,477 - AZOBR_RS24735 0.21 +0.3
602,735 - AZOBR_RS24735 0.28 +0.1
602,735 - AZOBR_RS24735 0.28 -0.1
602,851 + AZOBR_RS24735 0.31 +0.5
602,851 + AZOBR_RS24735 0.31 +0.5
602,851 + AZOBR_RS24735 0.31 +0.4
602,852 - AZOBR_RS24735 0.31 +0.5
602,893 + AZOBR_RS24735 0.32 -0.1
604,249 + AZOBR_RS24735 0.68 +1.0
604,249 + AZOBR_RS24735 0.68 +0.4
604,249 + AZOBR_RS24735 0.68 +0.0
604,249 + AZOBR_RS24735 0.68 +0.9
604,249 + AZOBR_RS24735 0.68 +0.6
604,249 + AZOBR_RS24735 0.68 +0.7
604,250 - AZOBR_RS24735 0.68 -1.5
604,390 + AZOBR_RS24735 0.72 +0.8
604,390 + AZOBR_RS24735 0.72 +0.0
604,390 + AZOBR_RS24735 0.72 +0.3
604,391 - AZOBR_RS24735 0.72 +0.1
604,391 - AZOBR_RS24735 0.72 +1.3
604,535 + AZOBR_RS24735 0.76 +0.3
604,873 + AZOBR_RS24735 0.85 -2.0
604,896 + AZOBR_RS24735 0.86 +0.1
605,155 + -0.3
605,156 - +0.1
605,156 - +2.8
605,167 + +0.4
605,188 + -0.2
605,189 - -0.2
605,189 - -1.4
605,279 - -0.1
605,347 + -2.6
605,347 + +0.5
605,537 + -0.5
605,537 + +1.1
605,558 + +0.3
605,559 - -0.6
605,608 + -0.9
605,616 + +0.9
606,292 + AZOBR_RS24740 0.78 +1.9
606,292 + AZOBR_RS24740 0.78 -2.2
606,292 + AZOBR_RS24740 0.78 +0.1
606,292 + AZOBR_RS24740 0.78 +0.6
606,293 - AZOBR_RS24740 0.78 +0.4
606,293 - AZOBR_RS24740 0.78 +0.4
606,293 - AZOBR_RS24740 0.78 -1.4

Or see this region's nucleotide sequence