Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS21690

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS21685 and AZOBR_RS21690 are separated by 32 nucleotidesAZOBR_RS21690 and AZOBR_RS21695 are separated by 665 nucleotides AZOBR_RS21685: AZOBR_RS21685 - formyltetrahydrofolate deformylase, at 1,642,845 to 1,643,711 _RS21685 AZOBR_RS21690: AZOBR_RS21690 - regulator, at 1,643,744 to 1,644,538 _RS21690 AZOBR_RS21695: AZOBR_RS21695 - hypothetical protein, at 1,645,204 to 1,645,683 _RS21695 Position (kb) 1643 1644 1645Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1642.762 kb on + strandat 1643.710 kb on - strandat 1644.256 kb on - strand, within AZOBR_RS21690at 1644.256 kb on - strand, within AZOBR_RS21690at 1644.256 kb on - strand, within AZOBR_RS21690at 1644.366 kb on + strand, within AZOBR_RS21690at 1644.420 kb on + strand, within AZOBR_RS21690at 1644.498 kb on + strandat 1644.498 kb on + strandat 1644.498 kb on + strandat 1644.552 kb on + strandat 1644.647 kb on + strandat 1644.648 kb on - strandat 1644.655 kb on + strandat 1644.656 kb on - strandat 1644.707 kb on + strandat 1644.721 kb on + strandat 1644.721 kb on + strandat 1644.722 kb on - strandat 1644.722 kb on - strandat 1644.722 kb on - strandat 1644.750 kb on + strandat 1644.751 kb on - strandat 1644.751 kb on - strandat 1644.999 kb on - strandat 1644.999 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
remove
1,642,762 + +0.7
1,643,710 - -0.8
1,644,256 - AZOBR_RS21690 0.64 -0.6
1,644,256 - AZOBR_RS21690 0.64 +0.8
1,644,256 - AZOBR_RS21690 0.64 -0.2
1,644,366 + AZOBR_RS21690 0.78 -0.7
1,644,420 + AZOBR_RS21690 0.85 -3.5
1,644,498 + +0.5
1,644,498 + +0.5
1,644,498 + -0.5
1,644,552 + +0.2
1,644,647 + -1.4
1,644,648 - +0.7
1,644,655 + -0.2
1,644,656 - +2.2
1,644,707 + -0.3
1,644,721 + -0.1
1,644,721 + -0.1
1,644,722 - -0.1
1,644,722 - +0.4
1,644,722 - -1.5
1,644,750 + -0.3
1,644,751 - -0.6
1,644,751 - +0.8
1,644,999 - -1.8
1,644,999 - -1.4

Or see this region's nucleotide sequence