Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00310

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00305 and AZOBR_RS00310 are separated by 105 nucleotidesAZOBR_RS00310 and AZOBR_RS00315 are separated by 75 nucleotides AZOBR_RS00305: AZOBR_RS00305 - porphobilinogen deaminase, at 54,555 to 55,481 _RS00305 AZOBR_RS00310: AZOBR_RS00310 - ribosomal RNA small subunit methyltransferase C, at 55,587 to 56,423 _RS00310 AZOBR_RS00315: AZOBR_RS00315 - tRNA threonylcarbamoyladenosine modification protein TsaD, at 56,499 to 57,572 _RS00315 Position (kb) 55 56 57Strain fitness (log2 ratio) -2 -1 0 1at 55.538 kb on + strandat 55.742 kb on - strand, within AZOBR_RS00310at 55.846 kb on + strand, within AZOBR_RS00310at 55.846 kb on + strand, within AZOBR_RS00310at 55.846 kb on + strand, within AZOBR_RS00310at 55.846 kb on + strand, within AZOBR_RS00310at 55.846 kb on + strand, within AZOBR_RS00310at 55.847 kb on - strand, within AZOBR_RS00310at 55.847 kb on - strand, within AZOBR_RS00310at 55.847 kb on - strand, within AZOBR_RS00310at 55.847 kb on - strand, within AZOBR_RS00310at 56.284 kb on + strand, within AZOBR_RS00310at 56.284 kb on + strand, within AZOBR_RS00310at 56.285 kb on - strand, within AZOBR_RS00310at 56.285 kb on - strand, within AZOBR_RS00310at 56.285 kb on - strand, within AZOBR_RS00310at 56.380 kb on + strandat 56.381 kb on - strandat 56.383 kb on + strandat 56.384 kb on - strandat 56.384 kb on - strandat 56.462 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
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55,538 + +0.2
55,742 - AZOBR_RS00310 0.19 +0.3
55,846 + AZOBR_RS00310 0.31 -0.4
55,846 + AZOBR_RS00310 0.31 +0.8
55,846 + AZOBR_RS00310 0.31 +0.0
55,846 + AZOBR_RS00310 0.31 +0.6
55,846 + AZOBR_RS00310 0.31 +0.2
55,847 - AZOBR_RS00310 0.31 +0.0
55,847 - AZOBR_RS00310 0.31 -1.8
55,847 - AZOBR_RS00310 0.31 +0.9
55,847 - AZOBR_RS00310 0.31 +1.5
56,284 + AZOBR_RS00310 0.83 -0.2
56,284 + AZOBR_RS00310 0.83 -0.2
56,285 - AZOBR_RS00310 0.83 +0.8
56,285 - AZOBR_RS00310 0.83 +1.3
56,285 - AZOBR_RS00310 0.83 +0.7
56,380 + +0.5
56,381 - +1.1
56,383 + -0.1
56,384 - +0.8
56,384 - +0.6
56,462 + -0.2

Or see this region's nucleotide sequence