Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23535

Experiment: L-Tryptophan (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_23530 and AO353_23535 are separated by 218 nucleotidesAO353_23535 and AO353_23540 overlap by 4 nucleotidesAO353_23540 and AO353_23545 are separated by 10 nucleotides AO353_23530: AO353_23530 - AraC family transcriptional regulator, at 5,153,168 to 5,154,124 _23530 AO353_23535: AO353_23535 - benzoate 1,2-dioxygenase large subunit, at 5,154,343 to 5,155,707 _23535 AO353_23540: AO353_23540 - benzoate 1,2-dioxygenase small subunit, at 5,155,704 to 5,156,192 _23540 AO353_23545: AO353_23545 - NADH oxidase, at 5,156,203 to 5,157,216 _23545 Position (kb) 5154 5155 5156Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.453 kb on + strand, within AO353_23530at 5153.453 kb on + strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.510 kb on + strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.724 kb on - strand, within AO353_23530at 5153.724 kb on - strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.903 kb on + strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.946 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.125 kb on + strandat 5154.125 kb on + strandat 5154.125 kb on + strandat 5154.125 kb on + strandat 5154.125 kb on + strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.129 kb on + strandat 5154.129 kb on + strandat 5154.130 kb on - strandat 5154.130 kb on - strandat 5154.130 kb on - strandat 5154.130 kb on - strandat 5154.136 kb on + strandat 5154.215 kb on - strandat 5154.288 kb on + strandat 5154.289 kb on - strandat 5154.301 kb on + strandat 5154.301 kb on + strandat 5154.302 kb on - strandat 5154.320 kb on + strandat 5154.403 kb on + strandat 5154.403 kb on + strandat 5154.403 kb on + strandat 5154.404 kb on - strandat 5154.484 kb on + strand, within AO353_23535at 5154.485 kb on - strand, within AO353_23535at 5154.485 kb on - strand, within AO353_23535at 5154.526 kb on + strand, within AO353_23535at 5154.658 kb on + strand, within AO353_23535at 5154.658 kb on + strand, within AO353_23535at 5154.658 kb on + strand, within AO353_23535at 5154.659 kb on - strand, within AO353_23535at 5154.659 kb on - strand, within AO353_23535at 5154.799 kb on + strand, within AO353_23535at 5154.799 kb on + strand, within AO353_23535at 5154.917 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strandat 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.939 kb on + strand, within AO353_23535at 5154.939 kb on + strand, within AO353_23535at 5154.939 kb on + strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.943 kb on + strand, within AO353_23535at 5154.943 kb on + strandat 5154.944 kb on - strand, within AO353_23535at 5154.944 kb on - strand, within AO353_23535at 5154.944 kb on - strand, within AO353_23535at 5155.015 kb on + strand, within AO353_23535at 5155.016 kb on - strand, within AO353_23535at 5155.016 kb on - strand, within AO353_23535at 5155.112 kb on - strand, within AO353_23535at 5155.177 kb on + strandat 5155.177 kb on + strand, within AO353_23535at 5155.178 kb on - strand, within AO353_23535at 5155.178 kb on - strand, within AO353_23535at 5155.261 kb on + strand, within AO353_23535at 5155.273 kb on + strand, within AO353_23535at 5155.273 kb on + strand, within AO353_23535at 5155.274 kb on - strand, within AO353_23535at 5155.274 kb on - strand, within AO353_23535at 5155.348 kb on + strand, within AO353_23535at 5155.348 kb on + strand, within AO353_23535at 5155.348 kb on + strand, within AO353_23535at 5155.349 kb on - strand, within AO353_23535at 5155.349 kb on - strand, within AO353_23535at 5155.349 kb on - strand, within AO353_23535at 5155.349 kb on - strand, within AO353_23535at 5155.349 kb on - strand, within AO353_23535at 5155.405 kb on + strand, within AO353_23535at 5155.634 kb on - strandat 5155.634 kb on - strandat 5155.634 kb on - strandat 5155.634 kb on - strandat 5155.634 kb on - strandat 5155.634 kb on - strandat 5155.716 kb on + strandat 5155.717 kb on - strandat 5155.756 kb on - strand, within AO353_23540at 5155.794 kb on + strand, within AO353_23540at 5155.794 kb on + strand, within AO353_23540at 5155.794 kb on + strand, within AO353_23540at 5155.794 kb on + strand, within AO353_23540at 5155.794 kb on + strand, within AO353_23540at 5155.795 kb on - strand, within AO353_23540at 5155.795 kb on - strand, within AO353_23540at 5155.795 kb on - strand, within AO353_23540at 5156.055 kb on + strand, within AO353_23540at 5156.055 kb on + strand, within AO353_23540at 5156.056 kb on - strand, within AO353_23540at 5156.073 kb on + strand, within AO353_23540at 5156.073 kb on + strand, within AO353_23540at 5156.074 kb on - strand, within AO353_23540at 5156.074 kb on - strand, within AO353_23540at 5156.074 kb on - strand, within AO353_23540at 5156.074 kb on - strand, within AO353_23540at 5156.074 kb on - strand, within AO353_23540at 5156.091 kb on + strand, within AO353_23540at 5156.091 kb on + strandat 5156.092 kb on - strand, within AO353_23540at 5156.092 kb on - strand, within AO353_23540at 5156.092 kb on - strand, within AO353_23540at 5156.092 kb on - strand, within AO353_23540at 5156.092 kb on - strand, within AO353_23540at 5156.092 kb on - strand, within AO353_23540at 5156.157 kb on + strandat 5156.157 kb on + strandat 5156.158 kb on - strandat 5156.158 kb on - strandat 5156.181 kb on + strandat 5156.181 kb on + strandat 5156.182 kb on - strandat 5156.390 kb on - strand, within AO353_23545at 5156.521 kb on + strand, within AO353_23545at 5156.521 kb on + strand, within AO353_23545at 5156.521 kb on + strand, within AO353_23545at 5156.522 kb on - strand, within AO353_23545at 5156.623 kb on + strand, within AO353_23545at 5156.623 kb on + strand, within AO353_23545at 5156.623 kb on + strand, within AO353_23545at 5156.623 kb on + strand, within AO353_23545at 5156.624 kb on - strand, within AO353_23545at 5156.624 kb on - strandat 5156.624 kb on - strand, within AO353_23545at 5156.624 kb on - strand, within AO353_23545at 5156.665 kb on + strand, within AO353_23545at 5156.666 kb on - strand, within AO353_23545

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
remove
5,153,349 - AO353_23530 0.19 +1.3
5,153,349 - AO353_23530 0.19 -0.5
5,153,349 - AO353_23530 0.19 +2.1
5,153,349 - AO353_23530 0.19 +0.1
5,153,349 - AO353_23530 0.19 +1.2
5,153,393 + AO353_23530 0.24 -0.4
5,153,393 + AO353_23530 0.24 +0.7
5,153,393 + AO353_23530 0.24 -0.0
5,153,393 + AO353_23530 0.24 +1.2
5,153,393 + AO353_23530 0.24 +0.1
5,153,393 + AO353_23530 0.24 +1.3
5,153,393 + AO353_23530 0.24 +1.0
5,153,394 - AO353_23530 0.24 -0.9
5,153,394 - AO353_23530 0.24 -0.1
5,153,394 - AO353_23530 0.24 -1.3
5,153,394 - AO353_23530 0.24 -0.7
5,153,394 - AO353_23530 0.24 -0.1
5,153,394 - AO353_23530 0.24 +0.3
5,153,394 - AO353_23530 0.24 +0.4
5,153,394 - AO353_23530 0.24 -0.5
5,153,394 - AO353_23530 0.24 +1.3
5,153,453 + AO353_23530 0.30 +2.2
5,153,453 + AO353_23530 0.30 -0.7
5,153,454 - AO353_23530 0.30 +0.2
5,153,454 - AO353_23530 0.30 -0.0
5,153,454 - AO353_23530 0.30 -0.1
5,153,510 + AO353_23530 0.36 -1.3
5,153,511 - AO353_23530 0.36 +0.4
5,153,511 - AO353_23530 0.36 +1.0
5,153,511 - AO353_23530 0.36 -0.4
5,153,511 - AO353_23530 0.36 -1.5
5,153,723 + AO353_23530 0.58 +1.7
5,153,723 + AO353_23530 0.58 +0.2
5,153,723 + AO353_23530 0.58 +0.1
5,153,723 + AO353_23530 0.58 -0.7
5,153,724 - AO353_23530 0.58 +0.4
5,153,724 - AO353_23530 0.58 +0.1
5,153,825 + AO353_23530 0.69 +0.1
5,153,825 + AO353_23530 0.69 +0.8
5,153,825 + AO353_23530 0.69 -0.5
5,153,826 - AO353_23530 0.69 -1.1
5,153,826 - AO353_23530 0.69 +0.1
5,153,826 - AO353_23530 0.69 +0.9
5,153,903 + AO353_23530 0.77 +1.4
5,153,904 - AO353_23530 0.77 -0.4
5,153,904 - AO353_23530 0.77 +1.0
5,153,904 - AO353_23530 0.77 +0.4
5,153,945 + AO353_23530 0.81 -1.3
5,153,945 + AO353_23530 0.81 +0.5
5,153,945 + AO353_23530 0.81 +1.4
5,153,946 - AO353_23530 0.81 -1.0
5,154,007 - AO353_23530 0.88 -1.1
5,154,007 - AO353_23530 0.88 +2.4
5,154,007 - AO353_23530 0.88 -0.4
5,154,007 - AO353_23530 0.88 -0.6
5,154,007 - AO353_23530 0.88 -1.1
5,154,007 - AO353_23530 0.88 -0.6
5,154,010 + AO353_23530 0.88 +0.9
5,154,010 + AO353_23530 0.88 +0.5
5,154,010 + AO353_23530 0.88 -1.5
5,154,011 - AO353_23530 0.88 +0.7
5,154,011 - AO353_23530 0.88 -0.9
5,154,011 - AO353_23530 0.88 +0.3
5,154,011 - AO353_23530 0.88 -0.7
5,154,125 + -0.6
5,154,125 + -0.7
5,154,125 + +1.2
5,154,125 + -1.0
5,154,125 + -1.4
5,154,126 - -1.6
5,154,126 - +0.6
5,154,126 - +0.0
5,154,126 - -0.4
5,154,126 - +0.1
5,154,126 - -0.1
5,154,126 - +1.1
5,154,126 - -0.8
5,154,126 - -0.4
5,154,126 - +0.7
5,154,129 + -0.7
5,154,129 + -0.1
5,154,130 - -0.9
5,154,130 - -0.1
5,154,130 - -0.1
5,154,130 - +0.3
5,154,136 + -1.9
5,154,215 - +0.3
5,154,288 + +0.8
5,154,289 - -0.8
5,154,301 + -0.6
5,154,301 + -0.4
5,154,302 - +0.1
5,154,320 + -0.0
5,154,403 + -0.6
5,154,403 + -0.4
5,154,403 + +0.6
5,154,404 - -0.0
5,154,484 + AO353_23535 0.10 -0.7
5,154,485 - AO353_23535 0.10 -0.7
5,154,485 - AO353_23535 0.10 -0.2
5,154,526 + AO353_23535 0.13 -0.8
5,154,658 + AO353_23535 0.23 -0.7
5,154,658 + AO353_23535 0.23 -1.4
5,154,658 + AO353_23535 0.23 -1.1
5,154,659 - AO353_23535 0.23 -2.1
5,154,659 - AO353_23535 0.23 +0.3
5,154,799 + AO353_23535 0.33 +0.3
5,154,799 + AO353_23535 0.33 -0.6
5,154,917 + AO353_23535 0.42 -0.2
5,154,937 + AO353_23535 0.44 +0.6
5,154,937 + AO353_23535 0.44 -0.4
5,154,937 + AO353_23535 0.44 -0.2
5,154,937 + AO353_23535 0.44 -0.0
5,154,937 + -0.6
5,154,937 + AO353_23535 0.44 -1.6
5,154,937 + AO353_23535 0.44 -0.7
5,154,937 + AO353_23535 0.44 -0.6
5,154,937 + AO353_23535 0.44 -0.8
5,154,937 + AO353_23535 0.44 -0.9
5,154,937 + AO353_23535 0.44 +1.3
5,154,938 - AO353_23535 0.44 -0.5
5,154,938 - AO353_23535 0.44 +0.3
5,154,938 - AO353_23535 0.44 +0.0
5,154,938 - AO353_23535 0.44 -0.6
5,154,938 - AO353_23535 0.44 +0.6
5,154,938 - AO353_23535 0.44 +0.4
5,154,938 - AO353_23535 0.44 +0.0
5,154,938 - AO353_23535 0.44 +0.1
5,154,938 - AO353_23535 0.44 -0.3
5,154,938 - AO353_23535 0.44 -0.7
5,154,939 + AO353_23535 0.44 +1.0
5,154,939 + AO353_23535 0.44 +0.1
5,154,939 + AO353_23535 0.44 +0.9
5,154,940 - AO353_23535 0.44 -1.1
5,154,940 - AO353_23535 0.44 +0.6
5,154,940 - AO353_23535 0.44 +0.6
5,154,940 - AO353_23535 0.44 -1.4
5,154,940 - AO353_23535 0.44 -0.6
5,154,940 - AO353_23535 0.44 +0.4
5,154,943 + AO353_23535 0.44 +0.3
5,154,943 + +0.3
5,154,944 - AO353_23535 0.44 +1.7
5,154,944 - AO353_23535 0.44 -0.8
5,154,944 - AO353_23535 0.44 +1.0
5,155,015 + AO353_23535 0.49 +0.4
5,155,016 - AO353_23535 0.49 -0.4
5,155,016 - AO353_23535 0.49 -0.1
5,155,112 - AO353_23535 0.56 -1.4
5,155,177 + +0.9
5,155,177 + AO353_23535 0.61 -0.0
5,155,178 - AO353_23535 0.61 +1.3
5,155,178 - AO353_23535 0.61 -1.9
5,155,261 + AO353_23535 0.67 +2.4
5,155,273 + AO353_23535 0.68 -0.7
5,155,273 + AO353_23535 0.68 -0.1
5,155,274 - AO353_23535 0.68 -0.3
5,155,274 - AO353_23535 0.68 -0.4
5,155,348 + AO353_23535 0.74 +0.2
5,155,348 + AO353_23535 0.74 -1.3
5,155,348 + AO353_23535 0.74 -0.1
5,155,349 - AO353_23535 0.74 -0.1
5,155,349 - AO353_23535 0.74 +0.0
5,155,349 - AO353_23535 0.74 +0.1
5,155,349 - AO353_23535 0.74 +0.4
5,155,349 - AO353_23535 0.74 +0.3
5,155,405 + AO353_23535 0.78 +0.1
5,155,634 - +1.1
5,155,634 - -0.1
5,155,634 - +0.2
5,155,634 - +0.6
5,155,634 - -1.1
5,155,634 - +0.7
5,155,716 + +0.3
5,155,717 - -0.5
5,155,756 - AO353_23540 0.11 -1.7
5,155,794 + AO353_23540 0.18 +1.2
5,155,794 + AO353_23540 0.18 -0.6
5,155,794 + AO353_23540 0.18 +2.0
5,155,794 + AO353_23540 0.18 -0.6
5,155,794 + AO353_23540 0.18 -1.7
5,155,795 - AO353_23540 0.19 +0.7
5,155,795 - AO353_23540 0.19 -0.6
5,155,795 - AO353_23540 0.19 +0.4
5,156,055 + AO353_23540 0.72 +0.5
5,156,055 + AO353_23540 0.72 -1.2
5,156,056 - AO353_23540 0.72 +1.4
5,156,073 + AO353_23540 0.75 -0.1
5,156,073 + AO353_23540 0.75 -1.6
5,156,074 - AO353_23540 0.76 +1.6
5,156,074 - AO353_23540 0.76 -1.4
5,156,074 - AO353_23540 0.76 -1.0
5,156,074 - AO353_23540 0.76 -1.4
5,156,074 - AO353_23540 0.76 -1.6
5,156,091 + AO353_23540 0.79 +0.4
5,156,091 + +4.8
5,156,092 - AO353_23540 0.79 -1.5
5,156,092 - AO353_23540 0.79 +0.9
5,156,092 - AO353_23540 0.79 +0.3
5,156,092 - AO353_23540 0.79 +1.7
5,156,092 - AO353_23540 0.79 +0.1
5,156,092 - AO353_23540 0.79 -1.5
5,156,157 + -0.5
5,156,157 + -0.6
5,156,158 - -1.1
5,156,158 - +0.1
5,156,181 + +0.4
5,156,181 + -0.6
5,156,182 - +0.0
5,156,390 - AO353_23545 0.18 +0.8
5,156,521 + AO353_23545 0.31 -1.0
5,156,521 + AO353_23545 0.31 +0.5
5,156,521 + AO353_23545 0.31 +0.4
5,156,522 - AO353_23545 0.31 +0.1
5,156,623 + AO353_23545 0.41 +0.9
5,156,623 + AO353_23545 0.41 -0.9
5,156,623 + AO353_23545 0.41 +0.4
5,156,623 + AO353_23545 0.41 -0.4
5,156,624 - AO353_23545 0.42 +0.4
5,156,624 - +0.4
5,156,624 - AO353_23545 0.42 +2.4
5,156,624 - AO353_23545 0.42 -2.0
5,156,665 + AO353_23545 0.46 +1.9
5,156,666 - AO353_23545 0.46 -1.9

Or see this region's nucleotide sequence