Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23530

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23525 and AO353_23530 are separated by 154 nucleotidesAO353_23530 and AO353_23535 are separated by 218 nucleotides AO353_23525: AO353_23525 - Catechol 1,2-dioxygenase (EC 1.13.11.1) (from data), at 5,152,084 to 5,153,013 _23525 AO353_23530: AO353_23530 - AraC family transcriptional regulator, at 5,153,168 to 5,154,124 _23530 AO353_23535: AO353_23535 - benzoate 1,2-dioxygenase large subunit, at 5,154,343 to 5,155,707 _23535 Position (kb) 5153 5154 5155Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5152.186 kb on + strand, within AO353_23525at 5152.187 kb on - strand, within AO353_23525at 5152.264 kb on + strand, within AO353_23525at 5152.265 kb on - strand, within AO353_23525at 5152.330 kb on + strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.331 kb on - strand, within AO353_23525at 5152.372 kb on - strand, within AO353_23525at 5152.411 kb on + strand, within AO353_23525at 5152.412 kb on - strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.570 kb on + strand, within AO353_23525at 5152.571 kb on - strand, within AO353_23525at 5152.571 kb on - strand, within AO353_23525at 5152.576 kb on + strand, within AO353_23525at 5152.577 kb on - strand, within AO353_23525at 5152.577 kb on - strand, within AO353_23525at 5152.816 kb on + strand, within AO353_23525at 5152.816 kb on + strand, within AO353_23525at 5152.816 kb on + strand, within AO353_23525at 5152.817 kb on - strand, within AO353_23525at 5152.817 kb on - strand, within AO353_23525at 5152.817 kb on - strand, within AO353_23525at 5152.817 kb on - strand, within AO353_23525at 5153.050 kb on + strandat 5153.050 kb on + strandat 5153.051 kb on - strandat 5153.051 kb on - strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.084 kb on + strandat 5153.085 kb on - strandat 5153.085 kb on - strandat 5153.085 kb on - strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.181 kb on + strandat 5153.182 kb on - strandat 5153.182 kb on - strandat 5153.182 kb on - strandat 5153.182 kb on - strandat 5153.182 kb on - strandat 5153.237 kb on + strandat 5153.238 kb on - strandat 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.349 kb on - strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.393 kb on + strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.394 kb on - strand, within AO353_23530at 5153.453 kb on + strand, within AO353_23530at 5153.453 kb on + strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.454 kb on - strand, within AO353_23530at 5153.510 kb on + strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.511 kb on - strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.723 kb on + strand, within AO353_23530at 5153.724 kb on - strand, within AO353_23530at 5153.724 kb on - strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.825 kb on + strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.826 kb on - strand, within AO353_23530at 5153.903 kb on + strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.904 kb on - strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.945 kb on + strand, within AO353_23530at 5153.946 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.007 kb on - strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.010 kb on + strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.011 kb on - strand, within AO353_23530at 5154.125 kb on + strandat 5154.125 kb on + strandat 5154.125 kb on + strandat 5154.125 kb on + strandat 5154.125 kb on + strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.126 kb on - strandat 5154.129 kb on + strandat 5154.129 kb on + strandat 5154.130 kb on - strandat 5154.130 kb on - strandat 5154.130 kb on - strandat 5154.130 kb on - strandat 5154.136 kb on + strandat 5154.215 kb on - strandat 5154.288 kb on + strandat 5154.289 kb on - strandat 5154.301 kb on + strandat 5154.301 kb on + strandat 5154.302 kb on - strandat 5154.320 kb on + strandat 5154.403 kb on + strandat 5154.403 kb on + strandat 5154.403 kb on + strandat 5154.404 kb on - strandat 5154.484 kb on + strand, within AO353_23535at 5154.485 kb on - strand, within AO353_23535at 5154.485 kb on - strand, within AO353_23535at 5154.526 kb on + strand, within AO353_23535at 5154.658 kb on + strand, within AO353_23535at 5154.658 kb on + strand, within AO353_23535at 5154.658 kb on + strand, within AO353_23535at 5154.659 kb on - strand, within AO353_23535at 5154.659 kb on - strand, within AO353_23535at 5154.799 kb on + strand, within AO353_23535at 5154.799 kb on + strand, within AO353_23535at 5154.917 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strandat 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.937 kb on + strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.938 kb on - strand, within AO353_23535at 5154.939 kb on + strand, within AO353_23535at 5154.939 kb on + strand, within AO353_23535at 5154.939 kb on + strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.940 kb on - strand, within AO353_23535at 5154.943 kb on + strand, within AO353_23535at 5154.943 kb on + strandat 5154.944 kb on - strand, within AO353_23535at 5154.944 kb on - strand, within AO353_23535at 5154.944 kb on - strand, within AO353_23535at 5155.015 kb on + strand, within AO353_23535at 5155.016 kb on - strand, within AO353_23535at 5155.016 kb on - strand, within AO353_23535at 5155.112 kb on - strand, within AO353_23535

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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5,152,186 + AO353_23525 0.11 -1.1
5,152,187 - AO353_23525 0.11 -1.3
5,152,264 + AO353_23525 0.19 +0.4
5,152,265 - AO353_23525 0.19 -1.7
5,152,330 + AO353_23525 0.26 -1.8
5,152,331 - AO353_23525 0.27 -2.5
5,152,331 - AO353_23525 0.27 +0.1
5,152,331 - AO353_23525 0.27 -3.3
5,152,372 - AO353_23525 0.31 -1.4
5,152,411 + AO353_23525 0.35 -1.2
5,152,412 - AO353_23525 0.35 -0.5
5,152,570 + AO353_23525 0.52 -0.2
5,152,570 + AO353_23525 0.52 -2.8
5,152,570 + AO353_23525 0.52 -1.3
5,152,570 + AO353_23525 0.52 -0.1
5,152,570 + AO353_23525 0.52 -1.8
5,152,571 - AO353_23525 0.52 +0.6
5,152,571 - AO353_23525 0.52 -1.5
5,152,576 + AO353_23525 0.53 -2.1
5,152,577 - AO353_23525 0.53 -3.4
5,152,577 - AO353_23525 0.53 -1.6
5,152,816 + AO353_23525 0.79 +0.1
5,152,816 + AO353_23525 0.79 -1.0
5,152,816 + AO353_23525 0.79 -0.7
5,152,817 - AO353_23525 0.79 +0.4
5,152,817 - AO353_23525 0.79 -0.9
5,152,817 - AO353_23525 0.79 -2.3
5,152,817 - AO353_23525 0.79 -1.6
5,153,050 + -0.7
5,153,050 + -0.1
5,153,051 - +0.6
5,153,051 - +0.6
5,153,084 + -0.1
5,153,084 + -2.5
5,153,084 + -0.5
5,153,084 + -1.4
5,153,084 + -1.7
5,153,084 + -0.2
5,153,085 - +1.4
5,153,085 - +0.4
5,153,085 - -1.7
5,153,181 + +0.3
5,153,181 + -1.3
5,153,181 + -0.3
5,153,181 + -0.9
5,153,181 + +0.0
5,153,181 + +0.7
5,153,181 + -0.3
5,153,182 - +0.2
5,153,182 - -0.4
5,153,182 - +0.7
5,153,182 - -0.8
5,153,182 - +0.2
5,153,237 + -0.8
5,153,238 - +0.1
5,153,349 - AO353_23530 0.19 +1.3
5,153,349 - AO353_23530 0.19 -0.5
5,153,349 - AO353_23530 0.19 +2.1
5,153,349 - AO353_23530 0.19 +0.1
5,153,349 - AO353_23530 0.19 +1.2
5,153,393 + AO353_23530 0.24 -0.4
5,153,393 + AO353_23530 0.24 +0.7
5,153,393 + AO353_23530 0.24 -0.0
5,153,393 + AO353_23530 0.24 +1.2
5,153,393 + AO353_23530 0.24 +0.1
5,153,393 + AO353_23530 0.24 +1.3
5,153,393 + AO353_23530 0.24 +1.0
5,153,394 - AO353_23530 0.24 -0.9
5,153,394 - AO353_23530 0.24 -0.1
5,153,394 - AO353_23530 0.24 -1.3
5,153,394 - AO353_23530 0.24 -0.7
5,153,394 - AO353_23530 0.24 -0.1
5,153,394 - AO353_23530 0.24 +0.3
5,153,394 - AO353_23530 0.24 +0.4
5,153,394 - AO353_23530 0.24 -0.5
5,153,394 - AO353_23530 0.24 +1.3
5,153,453 + AO353_23530 0.30 +2.2
5,153,453 + AO353_23530 0.30 -0.7
5,153,454 - AO353_23530 0.30 +0.2
5,153,454 - AO353_23530 0.30 -0.0
5,153,454 - AO353_23530 0.30 -0.1
5,153,510 + AO353_23530 0.36 -1.3
5,153,511 - AO353_23530 0.36 +0.4
5,153,511 - AO353_23530 0.36 +1.0
5,153,511 - AO353_23530 0.36 -0.4
5,153,511 - AO353_23530 0.36 -1.5
5,153,723 + AO353_23530 0.58 +1.7
5,153,723 + AO353_23530 0.58 +0.2
5,153,723 + AO353_23530 0.58 +0.1
5,153,723 + AO353_23530 0.58 -0.7
5,153,724 - AO353_23530 0.58 +0.4
5,153,724 - AO353_23530 0.58 +0.1
5,153,825 + AO353_23530 0.69 +0.1
5,153,825 + AO353_23530 0.69 +0.8
5,153,825 + AO353_23530 0.69 -0.5
5,153,826 - AO353_23530 0.69 -1.1
5,153,826 - AO353_23530 0.69 +0.1
5,153,826 - AO353_23530 0.69 +0.9
5,153,903 + AO353_23530 0.77 +1.4
5,153,904 - AO353_23530 0.77 -0.4
5,153,904 - AO353_23530 0.77 +1.0
5,153,904 - AO353_23530 0.77 +0.4
5,153,945 + AO353_23530 0.81 -1.3
5,153,945 + AO353_23530 0.81 +0.5
5,153,945 + AO353_23530 0.81 +1.4
5,153,946 - AO353_23530 0.81 -1.0
5,154,007 - AO353_23530 0.88 -1.1
5,154,007 - AO353_23530 0.88 +2.4
5,154,007 - AO353_23530 0.88 -0.4
5,154,007 - AO353_23530 0.88 -0.6
5,154,007 - AO353_23530 0.88 -1.1
5,154,007 - AO353_23530 0.88 -0.6
5,154,010 + AO353_23530 0.88 +0.9
5,154,010 + AO353_23530 0.88 +0.5
5,154,010 + AO353_23530 0.88 -1.5
5,154,011 - AO353_23530 0.88 +0.7
5,154,011 - AO353_23530 0.88 -0.9
5,154,011 - AO353_23530 0.88 +0.3
5,154,011 - AO353_23530 0.88 -0.7
5,154,125 + -0.6
5,154,125 + -0.7
5,154,125 + +1.2
5,154,125 + -1.0
5,154,125 + -1.4
5,154,126 - -1.6
5,154,126 - +0.6
5,154,126 - +0.0
5,154,126 - -0.4
5,154,126 - +0.1
5,154,126 - -0.1
5,154,126 - +1.1
5,154,126 - -0.8
5,154,126 - -0.4
5,154,126 - +0.7
5,154,129 + -0.7
5,154,129 + -0.1
5,154,130 - -0.9
5,154,130 - -0.1
5,154,130 - -0.1
5,154,130 - +0.3
5,154,136 + -1.9
5,154,215 - +0.3
5,154,288 + +0.8
5,154,289 - -0.8
5,154,301 + -0.6
5,154,301 + -0.4
5,154,302 - +0.1
5,154,320 + -0.0
5,154,403 + -0.6
5,154,403 + -0.4
5,154,403 + +0.6
5,154,404 - -0.0
5,154,484 + AO353_23535 0.10 -0.7
5,154,485 - AO353_23535 0.10 -0.7
5,154,485 - AO353_23535 0.10 -0.2
5,154,526 + AO353_23535 0.13 -0.8
5,154,658 + AO353_23535 0.23 -0.7
5,154,658 + AO353_23535 0.23 -1.4
5,154,658 + AO353_23535 0.23 -1.1
5,154,659 - AO353_23535 0.23 -2.1
5,154,659 - AO353_23535 0.23 +0.3
5,154,799 + AO353_23535 0.33 +0.3
5,154,799 + AO353_23535 0.33 -0.6
5,154,917 + AO353_23535 0.42 -0.2
5,154,937 + AO353_23535 0.44 +0.6
5,154,937 + AO353_23535 0.44 -0.4
5,154,937 + AO353_23535 0.44 -0.2
5,154,937 + AO353_23535 0.44 -0.0
5,154,937 + -0.6
5,154,937 + AO353_23535 0.44 -1.6
5,154,937 + AO353_23535 0.44 -0.7
5,154,937 + AO353_23535 0.44 -0.6
5,154,937 + AO353_23535 0.44 -0.8
5,154,937 + AO353_23535 0.44 -0.9
5,154,937 + AO353_23535 0.44 +1.3
5,154,938 - AO353_23535 0.44 -0.5
5,154,938 - AO353_23535 0.44 +0.3
5,154,938 - AO353_23535 0.44 +0.0
5,154,938 - AO353_23535 0.44 -0.6
5,154,938 - AO353_23535 0.44 +0.6
5,154,938 - AO353_23535 0.44 +0.4
5,154,938 - AO353_23535 0.44 +0.0
5,154,938 - AO353_23535 0.44 +0.1
5,154,938 - AO353_23535 0.44 -0.3
5,154,938 - AO353_23535 0.44 -0.7
5,154,939 + AO353_23535 0.44 +1.0
5,154,939 + AO353_23535 0.44 +0.1
5,154,939 + AO353_23535 0.44 +0.9
5,154,940 - AO353_23535 0.44 -1.1
5,154,940 - AO353_23535 0.44 +0.6
5,154,940 - AO353_23535 0.44 +0.6
5,154,940 - AO353_23535 0.44 -1.4
5,154,940 - AO353_23535 0.44 -0.6
5,154,940 - AO353_23535 0.44 +0.4
5,154,943 + AO353_23535 0.44 +0.3
5,154,943 + +0.3
5,154,944 - AO353_23535 0.44 +1.7
5,154,944 - AO353_23535 0.44 -0.8
5,154,944 - AO353_23535 0.44 +1.0
5,155,015 + AO353_23535 0.49 +0.4
5,155,016 - AO353_23535 0.49 -0.4
5,155,016 - AO353_23535 0.49 -0.1
5,155,112 - AO353_23535 0.56 -1.4

Or see this region's nucleotide sequence