Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23145 and AO353_23150 overlap by 8 nucleotides AO353_23150 and AO353_23155 are separated by 1 nucleotides AO353_23155 and AO353_23160 overlap by 10 nucleotides AO353_23160 and AO353_23165 are separated by 4 nucleotides
AO353_23145: AO353_23145 - hypothetical protein, at 5,078,916 to 5,080,598
_23145
AO353_23150: AO353_23150 - short-chain dehydrogenase, at 5,080,591 to 5,081,388
_23150
AO353_23155: AO353_23155 - IclR family transcriptional regulator, at 5,081,390 to 5,082,232
_23155
AO353_23160: AO353_23160 - hydrolase, at 5,082,223 to 5,083,107
_23160
AO353_23165: AO353_23165 - cupin, at 5,083,112 to 5,083,675
_23165
Position (kb)
5081
5082
5083 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5080.408 kb on + strand, within AO353_23145 at 5080.408 kb on + strand, within AO353_23145 at 5080.408 kb on + strand, within AO353_23145 at 5080.409 kb on - strand, within AO353_23145 at 5080.409 kb on - strand, within AO353_23145 at 5080.583 kb on + strand at 5080.583 kb on + strand at 5080.583 kb on + strand at 5080.584 kb on - strand at 5080.584 kb on - strand at 5080.593 kb on - strand at 5080.593 kb on - strand at 5080.643 kb on + strand at 5080.643 kb on + strand at 5081.379 kb on - strand at 5081.448 kb on + strand at 5081.448 kb on + strand at 5081.449 kb on - strand at 5081.564 kb on - strand, within AO353_23155 at 5081.564 kb on - strand, within AO353_23155 at 5081.862 kb on + strand, within AO353_23155 at 5081.862 kb on + strand, within AO353_23155 at 5081.862 kb on + strand, within AO353_23155 at 5081.862 kb on + strand, within AO353_23155 at 5081.863 kb on - strand, within AO353_23155 at 5081.863 kb on - strand, within AO353_23155 at 5081.863 kb on - strand at 5081.863 kb on - strand, within AO353_23155 at 5081.863 kb on - strand, within AO353_23155 at 5081.973 kb on + strand, within AO353_23155 at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.186 kb on + strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.187 kb on - strand at 5082.227 kb on - strand at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.466 kb on + strand, within AO353_23160 at 5082.467 kb on - strand, within AO353_23160 at 5082.467 kb on - strand, within AO353_23160 at 5082.558 kb on - strand, within AO353_23160 at 5082.558 kb on - strand, within AO353_23160 at 5082.866 kb on + strand, within AO353_23160 at 5082.925 kb on + strand, within AO353_23160 at 5083.113 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 5,080,408 + AO353_23145 0.89 +0.0 5,080,408 + AO353_23145 0.89 +0.4 5,080,408 + AO353_23145 0.89 +0.7 5,080,409 - AO353_23145 0.89 -1.4 5,080,409 - AO353_23145 0.89 -2.1 5,080,583 + +0.5 5,080,583 + -1.7 5,080,583 + -2.6 5,080,584 - -0.7 5,080,584 - -0.5 5,080,593 - +1.3 5,080,593 - -2.0 5,080,643 + +0.5 5,080,643 + +0.3 5,081,379 - -0.4 5,081,448 + -0.5 5,081,448 + -0.1 5,081,449 - +0.5 5,081,564 - AO353_23155 0.21 +0.6 5,081,564 - AO353_23155 0.21 +1.0 5,081,862 + AO353_23155 0.56 +0.8 5,081,862 + AO353_23155 0.56 +0.8 5,081,862 + AO353_23155 0.56 -0.8 5,081,862 + AO353_23155 0.56 +1.2 5,081,863 - AO353_23155 0.56 +2.0 5,081,863 - AO353_23155 0.56 +0.6 5,081,863 - +0.9 5,081,863 - AO353_23155 0.56 -0.5 5,081,863 - AO353_23155 0.56 +0.5 5,081,973 + AO353_23155 0.69 -1.5 5,082,186 + -1.4 5,082,186 + -0.4 5,082,186 + -0.3 5,082,186 + +2.7 5,082,186 + -0.3 5,082,186 + +0.6 5,082,186 + +1.5 5,082,186 + +1.7 5,082,186 + -0.3 5,082,186 + +0.9 5,082,186 + -2.2 5,082,186 + -1.1 5,082,187 - -0.3 5,082,187 - +0.2 5,082,187 - +0.2 5,082,187 - -1.1 5,082,187 - -1.2 5,082,187 - -0.0 5,082,187 - -0.3 5,082,187 - -0.3 5,082,227 - -0.2 5,082,466 + AO353_23160 0.27 +0.1 5,082,466 + AO353_23160 0.27 +0.2 5,082,466 + AO353_23160 0.27 -1.5 5,082,466 + AO353_23160 0.27 +0.9 5,082,466 + AO353_23160 0.27 +0.7 5,082,466 + AO353_23160 0.27 -0.5 5,082,466 + AO353_23160 0.27 -1.3 5,082,467 - AO353_23160 0.28 -1.4 5,082,467 - AO353_23160 0.28 -1.4 5,082,558 - AO353_23160 0.38 -2.1 5,082,558 - AO353_23160 0.38 -0.6 5,082,866 + AO353_23160 0.73 +0.9 5,082,925 + AO353_23160 0.79 -0.2 5,083,113 + +2.1
Or see this region's nucleotide sequence