Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1946

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1945 and Shewana3_1946 overlap by 74 nucleotidesShewana3_1946 and Shewana3_1947 overlap by 26 nucleotidesShewana3_1947 and Shewana3_1948 overlap by 1 nucleotides Shewana3_1945: Shewana3_1945 - hypothetical protein (RefSeq), at 2,312,635 to 2,313,834 _1945 Shewana3_1946: Shewana3_1946 - response regulator receiver protein (RefSeq), at 2,313,761 to 2,315,701 _1946 Shewana3_1947: Shewana3_1947 - alpha-L-glutamate ligase-like protein (RefSeq), at 2,315,676 to 2,316,620 _1947 Shewana3_1948: Shewana3_1948 - hypothetical protein (RefSeq), at 2,316,620 to 2,318,128 _1948 Position (kb) 2313 2314 2315 2316Strain fitness (log2 ratio) -3 -2 -1 0 1at 2312.988 kb on - strand, within Shewana3_1945at 2313.052 kb on - strand, within Shewana3_1945at 2313.098 kb on + strand, within Shewana3_1945at 2313.106 kb on - strand, within Shewana3_1945at 2313.181 kb on - strand, within Shewana3_1945at 2313.205 kb on - strand, within Shewana3_1945at 2313.373 kb on + strand, within Shewana3_1945at 2313.383 kb on - strand, within Shewana3_1945at 2313.402 kb on - strand, within Shewana3_1945at 2313.457 kb on + strand, within Shewana3_1945at 2313.514 kb on - strand, within Shewana3_1945at 2313.923 kb on - strandat 2314.155 kb on - strand, within Shewana3_1946at 2314.315 kb on + strand, within Shewana3_1946at 2314.387 kb on - strand, within Shewana3_1946at 2314.586 kb on - strand, within Shewana3_1946at 2314.765 kb on - strand, within Shewana3_1946at 2314.945 kb on - strand, within Shewana3_1946at 2314.992 kb on - strand, within Shewana3_1946at 2315.327 kb on - strand, within Shewana3_1946at 2315.404 kb on + strand, within Shewana3_1946at 2315.412 kb on - strand, within Shewana3_1946at 2315.642 kb on - strandat 2315.896 kb on - strand, within Shewana3_1947at 2315.920 kb on - strand, within Shewana3_1947at 2315.999 kb on - strand, within Shewana3_1947at 2316.259 kb on - strand, within Shewana3_1947at 2316.469 kb on - strand, within Shewana3_1947at 2316.665 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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2,312,988 - Shewana3_1945 0.29 +0.4
2,313,052 - Shewana3_1945 0.35 -0.1
2,313,098 + Shewana3_1945 0.39 +0.9
2,313,106 - Shewana3_1945 0.39 +0.8
2,313,181 - Shewana3_1945 0.46 +0.7
2,313,205 - Shewana3_1945 0.47 +1.2
2,313,373 + Shewana3_1945 0.61 -0.5
2,313,383 - Shewana3_1945 0.62 -3.7
2,313,402 - Shewana3_1945 0.64 +1.1
2,313,457 + Shewana3_1945 0.69 +1.0
2,313,514 - Shewana3_1945 0.73 -0.2
2,313,923 - -2.0
2,314,155 - Shewana3_1946 0.20 -0.4
2,314,315 + Shewana3_1946 0.29 -1.0
2,314,387 - Shewana3_1946 0.32 -1.8
2,314,586 - Shewana3_1946 0.43 -0.4
2,314,765 - Shewana3_1946 0.52 -0.8
2,314,945 - Shewana3_1946 0.61 -0.2
2,314,992 - Shewana3_1946 0.63 -1.0
2,315,327 - Shewana3_1946 0.81 +0.6
2,315,404 + Shewana3_1946 0.85 +0.6
2,315,412 - Shewana3_1946 0.85 +0.6
2,315,642 - +0.6
2,315,896 - Shewana3_1947 0.23 -0.1
2,315,920 - Shewana3_1947 0.26 -0.9
2,315,999 - Shewana3_1947 0.34 -0.6
2,316,259 - Shewana3_1947 0.62 -1.3
2,316,469 - Shewana3_1947 0.84 -0.3
2,316,665 + -0.4

Or see this region's nucleotide sequence