Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1945 and Shewana3_1946 overlap by 74 nucleotides Shewana3_1946 and Shewana3_1947 overlap by 26 nucleotides Shewana3_1947 and Shewana3_1948 overlap by 1 nucleotides
Shewana3_1945: Shewana3_1945 - hypothetical protein (RefSeq), at 2,312,635 to 2,313,834
_1945
Shewana3_1946: Shewana3_1946 - response regulator receiver protein (RefSeq), at 2,313,761 to 2,315,701
_1946
Shewana3_1947: Shewana3_1947 - alpha-L-glutamate ligase-like protein (RefSeq), at 2,315,676 to 2,316,620
_1947
Shewana3_1948: Shewana3_1948 - hypothetical protein (RefSeq), at 2,316,620 to 2,318,128
_1948
Position (kb)
2313
2314
2315
2316 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2312.988 kb on - strand, within Shewana3_1945 at 2313.052 kb on - strand, within Shewana3_1945 at 2313.098 kb on + strand, within Shewana3_1945 at 2313.106 kb on - strand, within Shewana3_1945 at 2313.181 kb on - strand, within Shewana3_1945 at 2313.205 kb on - strand, within Shewana3_1945 at 2313.373 kb on + strand, within Shewana3_1945 at 2313.383 kb on - strand, within Shewana3_1945 at 2313.402 kb on - strand, within Shewana3_1945 at 2313.457 kb on + strand, within Shewana3_1945 at 2313.514 kb on - strand, within Shewana3_1945 at 2313.923 kb on - strand at 2314.155 kb on - strand, within Shewana3_1946 at 2314.315 kb on + strand, within Shewana3_1946 at 2314.387 kb on - strand, within Shewana3_1946 at 2314.586 kb on - strand, within Shewana3_1946 at 2314.765 kb on - strand, within Shewana3_1946 at 2314.945 kb on - strand, within Shewana3_1946 at 2314.992 kb on - strand, within Shewana3_1946 at 2315.327 kb on - strand, within Shewana3_1946 at 2315.404 kb on + strand, within Shewana3_1946 at 2315.412 kb on - strand, within Shewana3_1946 at 2315.642 kb on - strand at 2315.896 kb on - strand, within Shewana3_1947 at 2315.920 kb on - strand, within Shewana3_1947 at 2315.999 kb on - strand, within Shewana3_1947 at 2316.259 kb on - strand, within Shewana3_1947 at 2316.469 kb on - strand, within Shewana3_1947 at 2316.665 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 2,312,988 - Shewana3_1945 0.29 +0.4 2,313,052 - Shewana3_1945 0.35 -0.1 2,313,098 + Shewana3_1945 0.39 +0.9 2,313,106 - Shewana3_1945 0.39 +0.8 2,313,181 - Shewana3_1945 0.46 +0.7 2,313,205 - Shewana3_1945 0.47 +1.2 2,313,373 + Shewana3_1945 0.61 -0.5 2,313,383 - Shewana3_1945 0.62 -3.7 2,313,402 - Shewana3_1945 0.64 +1.1 2,313,457 + Shewana3_1945 0.69 +1.0 2,313,514 - Shewana3_1945 0.73 -0.2 2,313,923 - -2.0 2,314,155 - Shewana3_1946 0.20 -0.4 2,314,315 + Shewana3_1946 0.29 -1.0 2,314,387 - Shewana3_1946 0.32 -1.8 2,314,586 - Shewana3_1946 0.43 -0.4 2,314,765 - Shewana3_1946 0.52 -0.8 2,314,945 - Shewana3_1946 0.61 -0.2 2,314,992 - Shewana3_1946 0.63 -1.0 2,315,327 - Shewana3_1946 0.81 +0.6 2,315,404 + Shewana3_1946 0.85 +0.6 2,315,412 - Shewana3_1946 0.85 +0.6 2,315,642 - +0.6 2,315,896 - Shewana3_1947 0.23 -0.1 2,315,920 - Shewana3_1947 0.26 -0.9 2,315,999 - Shewana3_1947 0.34 -0.6 2,316,259 - Shewana3_1947 0.62 -1.3 2,316,469 - Shewana3_1947 0.84 -0.3 2,316,665 + -0.4
Or see this region's nucleotide sequence