Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1467

Experiment: Carbon source Sucrose 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1465 and Shewana3_1466 are separated by 169 nucleotidesShewana3_1466 and Shewana3_1467 are separated by 65 nucleotidesShewana3_1467 and Shewana3_1468 are separated by 80 nucleotides Shewana3_1465: Shewana3_1465 - peptidase M16 domain-containing protein (RefSeq), at 1,702,658 to 1,705,447 _1465 Shewana3_1466: Shewana3_1466 - phosphohistidine phosphatase, SixA (RefSeq), at 1,705,617 to 1,706,087 _1466 Shewana3_1467: Shewana3_1467 - hypothetical protein (RefSeq), at 1,706,153 to 1,706,683 _1467 Shewana3_1468: Shewana3_1468 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq), at 1,706,764 to 1,707,708 _1468 Position (kb) 1706 1707Strain fitness (log2 ratio) -1 0 1at 1705.158 kb on + strand, within Shewana3_1465at 1705.432 kb on + strandat 1705.673 kb on + strand, within Shewana3_1466at 1705.710 kb on + strand, within Shewana3_1466at 1705.718 kb on - strand, within Shewana3_1466at 1705.758 kb on + strand, within Shewana3_1466at 1705.910 kb on + strand, within Shewana3_1466at 1706.233 kb on - strand, within Shewana3_1467at 1706.238 kb on + strand, within Shewana3_1467at 1706.343 kb on - strand, within Shewana3_1467at 1706.345 kb on + strand, within Shewana3_1467at 1706.353 kb on - strand, within Shewana3_1467at 1706.797 kb on + strandat 1706.807 kb on + strandat 1706.813 kb on - strandat 1706.815 kb on - strandat 1706.941 kb on + strand, within Shewana3_1468at 1707.110 kb on - strand, within Shewana3_1468at 1707.224 kb on + strand, within Shewana3_1468at 1707.299 kb on + strand, within Shewana3_1468at 1707.398 kb on + strand, within Shewana3_1468at 1707.484 kb on + strand, within Shewana3_1468

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM
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1,705,158 + Shewana3_1465 0.90 -1.6
1,705,432 + -0.0
1,705,673 + Shewana3_1466 0.12 +1.3
1,705,710 + Shewana3_1466 0.20 +0.1
1,705,718 - Shewana3_1466 0.21 +0.2
1,705,758 + Shewana3_1466 0.30 +1.0
1,705,910 + Shewana3_1466 0.62 -0.8
1,706,233 - Shewana3_1467 0.15 -0.0
1,706,238 + Shewana3_1467 0.16 -0.8
1,706,343 - Shewana3_1467 0.36 -0.6
1,706,345 + Shewana3_1467 0.36 -1.5
1,706,353 - Shewana3_1467 0.38 +0.1
1,706,797 + +0.6
1,706,807 + -0.7
1,706,813 - -0.7
1,706,815 - +0.4
1,706,941 + Shewana3_1468 0.19 -0.6
1,707,110 - Shewana3_1468 0.37 +0.8
1,707,224 + Shewana3_1468 0.49 +0.6
1,707,299 + Shewana3_1468 0.57 -0.2
1,707,398 + Shewana3_1468 0.67 +0.8
1,707,484 + Shewana3_1468 0.76 +0.1

Or see this region's nucleotide sequence