Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0448 and Shewana3_0449 are separated by 219 nucleotides Shewana3_0449 and Shewana3_0450 are separated by 333 nucleotides Shewana3_0450 and Shewana3_0451 are separated by 84 nucleotides
Shewana3_0448: Shewana3_0448 - major facilitator transporter (RefSeq), at 523,260 to 524,432
_0448
Shewana3_0449: Shewana3_0449 - diguanylate cyclase with GAF sensor (RefSeq), at 524,652 to 525,695
_0449
Shewana3_0450: Shewana3_0450 - no description, at 526,029 to 526,265
_0450
Shewana3_0451: Shewana3_0451 - anion transporter (RefSeq), at 526,350 to 527,750
_0451
Position (kb) 524
525
526 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 523.661 kb on + strand, within Shewana3_0448 at 523.667 kb on - strand, within Shewana3_0448 at 523.667 kb on - strand, within Shewana3_0448 at 523.747 kb on + strand, within Shewana3_0448 at 523.815 kb on - strand, within Shewana3_0448 at 524.485 kb on + strand at 524.485 kb on + strand at 524.493 kb on - strand at 524.497 kb on + strand at 524.507 kb on + strand at 524.549 kb on - strand at 524.658 kb on - strand at 524.665 kb on + strand at 524.673 kb on - strand at 524.785 kb on - strand, within Shewana3_0449 at 524.789 kb on + strand, within Shewana3_0449 at 524.789 kb on + strand, within Shewana3_0449 at 524.797 kb on - strand, within Shewana3_0449 at 524.797 kb on - strand, within Shewana3_0449 at 524.833 kb on - strand, within Shewana3_0449 at 524.951 kb on - strand, within Shewana3_0449 at 525.085 kb on + strand, within Shewana3_0449 at 525.271 kb on + strand, within Shewana3_0449 at 525.327 kb on + strand, within Shewana3_0449 at 525.368 kb on - strand, within Shewana3_0449 at 525.393 kb on + strand, within Shewana3_0449 at 525.425 kb on + strand, within Shewana3_0449 at 525.516 kb on + strand, within Shewana3_0449 at 525.527 kb on + strand, within Shewana3_0449 at 525.549 kb on - strand, within Shewana3_0449 at 525.657 kb on - strand at 525.668 kb on + strand at 525.705 kb on + strand at 525.712 kb on + strand at 526.090 kb on + strand, within Shewana3_0450 at 526.463 kb on + strand at 526.471 kb on - strand at 526.508 kb on - strand, within Shewana3_0451 at 526.517 kb on - strand, within Shewana3_0451 at 526.542 kb on - strand, within Shewana3_0451 at 526.594 kb on + strand, within Shewana3_0451
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 523,661 + Shewana3_0448 0.34 -0.3 523,667 - Shewana3_0448 0.35 +0.3 523,667 - Shewana3_0448 0.35 +1.0 523,747 + Shewana3_0448 0.42 +0.4 523,815 - Shewana3_0448 0.47 +0.1 524,485 + +0.2 524,485 + -1.0 524,493 - +0.4 524,497 + +1.0 524,507 + +0.0 524,549 - +0.2 524,658 - +0.9 524,665 + -0.6 524,673 - -1.0 524,785 - Shewana3_0449 0.13 +1.0 524,789 + Shewana3_0449 0.13 +1.0 524,789 + Shewana3_0449 0.13 -0.7 524,797 - Shewana3_0449 0.14 +0.0 524,797 - Shewana3_0449 0.14 +0.0 524,833 - Shewana3_0449 0.17 +0.1 524,951 - Shewana3_0449 0.29 +0.0 525,085 + Shewana3_0449 0.41 -0.3 525,271 + Shewana3_0449 0.59 +1.4 525,327 + Shewana3_0449 0.65 -0.8 525,368 - Shewana3_0449 0.69 +1.1 525,393 + Shewana3_0449 0.71 -0.2 525,425 + Shewana3_0449 0.74 +0.1 525,516 + Shewana3_0449 0.83 +0.4 525,527 + Shewana3_0449 0.84 +0.5 525,549 - Shewana3_0449 0.86 +0.2 525,657 - +1.2 525,668 + +0.4 525,705 + -4.5 525,712 + +1.0 526,090 + Shewana3_0450 0.26 -0.2 526,463 + +0.1 526,471 - +0.5 526,508 - Shewana3_0451 0.11 +0.2 526,517 - Shewana3_0451 0.12 +0.4 526,542 - Shewana3_0451 0.14 +0.6 526,594 + Shewana3_0451 0.17 +1.1
Or see this region's nucleotide sequence