Experiment: Carbon source Sucrose 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4149 and Shewana3_4150 are separated by 130 nucleotides Shewana3_4150 and Shewana3_4151 are separated by 375 nucleotides
Shewana3_4149: Shewana3_4149 - IS605 family transposase OrfB (RefSeq), at 10,342 to 11,445
_4149
Shewana3_4150: Shewana3_4150 - hypothetical protein (RefSeq), at 11,576 to 11,842
_4150
Shewana3_4151: Shewana3_4151 - hypothetical protein (RefSeq), at 12,218 to 12,505
_4151
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 9.404 kb on - strand at 9.493 kb on - strand at 9.493 kb on - strand at 9.493 kb on - strand at 9.493 kb on - strand at 9.608 kb on + strand at 9.633 kb on - strand at 9.666 kb on - strand at 9.748 kb on + strand at 9.756 kb on - strand at 9.771 kb on + strand at 9.778 kb on - strand at 9.778 kb on - strand at 9.778 kb on - strand at 9.778 kb on - strand at 9.823 kb on - strand at 9.855 kb on - strand at 9.855 kb on - strand at 9.930 kb on + strand at 9.938 kb on - strand at 9.960 kb on - strand at 9.966 kb on + strand at 10.026 kb on - strand at 10.085 kb on + strand at 10.152 kb on - strand at 10.197 kb on - strand at 11.505 kb on + strand at 11.801 kb on + strand, within Shewana3_4150 at 11.806 kb on + strand, within Shewana3_4150 at 12.292 kb on - strand, within Shewana3_4151
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 2.5 mM remove 9,404 - -0.9 9,493 - +0.3 9,493 - -0.1 9,493 - -0.0 9,493 - -0.6 9,608 + +0.3 9,633 - -0.1 9,666 - -0.1 9,748 + -0.1 9,756 - -0.4 9,771 + -0.0 9,778 - +0.2 9,778 - +0.1 9,778 - +1.3 9,778 - -0.0 9,823 - -0.8 9,855 - +0.3 9,855 - +0.5 9,930 + +0.1 9,938 - +0.7 9,960 - +0.8 9,966 + -0.1 10,026 - -0.1 10,085 + +1.2 10,152 - +0.2 10,197 - -0.7 11,505 + -4.5 11,801 + Shewana3_4150 0.84 -0.2 11,806 + Shewana3_4150 0.86 +0.4 12,292 - Shewana3_4151 0.26 +1.4
Or see this region's nucleotide sequence