Experiment: N-Acetyl-D-glucosamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0500 and BT0501 are separated by 99 nucleotides BT0501 and BT0502 are separated by 89 nucleotides
BT0500: BT0500 - putative transport protein (NCBI ptt file), at 618,425 to 620,023
BT0500
BT0501: BT0501 - hypothetical protein (NCBI ptt file), at 620,123 to 620,455
BT0501
BT0502: BT0502 - TonB-dependent outer membrane receptor (NCBI ptt file), at 620,545 to 622,872
BT0502
Position (kb) 620
621 Strain fitness (log2 ratio) -2
-1
0
1 at 619.135 kb on - strand, within BT0500 at 619.280 kb on - strand, within BT0500 at 619.331 kb on - strand, within BT0500 at 619.528 kb on - strand, within BT0500 at 619.593 kb on + strand, within BT0500 at 619.651 kb on + strand, within BT0500 at 619.765 kb on - strand, within BT0500 at 619.797 kb on + strand, within BT0500 at 619.798 kb on - strand, within BT0500 at 619.930 kb on + strand at 619.989 kb on + strand at 620.019 kb on - strand at 620.039 kb on - strand at 620.039 kb on - strand at 620.045 kb on - strand at 620.070 kb on - strand at 620.167 kb on + strand, within BT0501 at 620.168 kb on - strand, within BT0501 at 620.381 kb on - strand, within BT0501 at 620.390 kb on + strand, within BT0501 at 620.390 kb on + strand, within BT0501 at 620.465 kb on - strand at 620.555 kb on - strand at 620.685 kb on + strand at 620.712 kb on + strand at 620.712 kb on + strand at 620.823 kb on - strand, within BT0502 at 620.849 kb on + strand, within BT0502 at 620.868 kb on + strand, within BT0502 at 620.982 kb on - strand, within BT0502 at 621.054 kb on - strand, within BT0502 at 621.054 kb on - strand, within BT0502 at 621.100 kb on - strand, within BT0502 at 621.100 kb on - strand, within BT0502 at 621.282 kb on + strand, within BT0502 at 621.283 kb on - strand, within BT0502 at 621.285 kb on + strand, within BT0502 at 621.286 kb on - strand, within BT0502 at 621.416 kb on - strand, within BT0502 at 621.448 kb on + strand, within BT0502
Per-strain Table
Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N) remove 619,135 - BT0500 0.44 -0.4 619,280 - BT0500 0.53 -2.1 619,331 - BT0500 0.57 -1.4 619,528 - BT0500 0.69 +0.6 619,593 + BT0500 0.73 +1.6 619,651 + BT0500 0.77 +1.3 619,765 - BT0500 0.84 +0.5 619,797 + BT0500 0.86 -0.4 619,798 - BT0500 0.86 -1.0 619,930 + -0.7 619,989 + +1.6 620,019 - -0.7 620,039 - +0.0 620,039 - -1.7 620,045 - +0.3 620,070 - -0.7 620,167 + BT0501 0.13 +0.3 620,168 - BT0501 0.14 -1.0 620,381 - BT0501 0.77 -2.1 620,390 + BT0501 0.80 -1.6 620,390 + BT0501 0.80 -1.7 620,465 - +0.0 620,555 - +0.0 620,685 + +0.4 620,712 + +1.0 620,712 + -0.6 620,823 - BT0502 0.12 +0.1 620,849 + BT0502 0.13 -1.0 620,868 + BT0502 0.14 +0.3 620,982 - BT0502 0.19 -1.2 621,054 - BT0502 0.22 +0.3 621,054 - BT0502 0.22 -0.6 621,100 - BT0502 0.24 -0.7 621,100 - BT0502 0.24 -1.9 621,282 + BT0502 0.32 +0.3 621,283 - BT0502 0.32 -1.9 621,285 + BT0502 0.32 -1.1 621,286 - BT0502 0.32 -0.3 621,416 - BT0502 0.37 +0.0 621,448 + BT0502 0.39 -1.2
Or see this region's nucleotide sequence