Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0258

Experiment: N-Acetyl-D-glucosamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0257 and BT0258 are separated by 228 nucleotidesBT0258 and BT0259 are separated by 139 nucleotides BT0257: BT0257 - xanthan lyase (NCBI ptt file), at 285,198 to 288,110 BT0257 BT0258: BT0258 - glucosamine-6-phosphate isomerase (NCBI ptt file), at 288,339 to 290,330 BT0258 BT0259: BT0259 - putative amidohydrolase (NCBI ptt file), at 290,470 to 291,255 BT0259 Position (kb) 288 289 290 291Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 287.414 kb on - strand, within BT0257at 287.486 kb on - strand, within BT0257at 287.553 kb on - strand, within BT0257at 287.553 kb on - strand, within BT0257at 287.765 kb on - strand, within BT0257at 287.807 kb on - strand, within BT0257at 287.807 kb on - strand, within BT0257at 287.999 kb on - strandat 288.141 kb on + strandat 288.142 kb on - strandat 288.142 kb on - strandat 288.142 kb on - strandat 288.146 kb on - strandat 288.230 kb on - strandat 288.341 kb on - strandat 288.357 kb on + strandat 288.379 kb on + strandat 288.403 kb on + strandat 288.403 kb on + strandat 288.465 kb on - strandat 288.468 kb on + strandat 288.546 kb on - strand, within BT0258at 288.598 kb on + strand, within BT0258at 288.608 kb on + strand, within BT0258at 288.678 kb on - strand, within BT0258at 288.678 kb on - strand, within BT0258at 288.678 kb on - strand, within BT0258at 288.693 kb on - strand, within BT0258at 288.742 kb on - strand, within BT0258at 288.763 kb on - strand, within BT0258at 288.771 kb on + strand, within BT0258at 288.850 kb on - strand, within BT0258at 288.865 kb on + strand, within BT0258at 288.969 kb on + strand, within BT0258at 289.010 kb on + strand, within BT0258at 289.101 kb on + strand, within BT0258at 289.101 kb on + strand, within BT0258at 289.125 kb on + strand, within BT0258at 289.188 kb on - strand, within BT0258at 289.233 kb on - strand, within BT0258at 289.233 kb on - strand, within BT0258at 289.361 kb on - strand, within BT0258at 289.413 kb on + strand, within BT0258at 289.414 kb on - strand, within BT0258at 289.544 kb on - strand, within BT0258at 289.605 kb on - strand, within BT0258at 289.628 kb on - strand, within BT0258at 289.629 kb on + strand, within BT0258at 289.629 kb on + strand, within BT0258at 289.652 kb on + strand, within BT0258at 289.741 kb on - strand, within BT0258at 289.796 kb on + strand, within BT0258at 289.797 kb on - strand, within BT0258at 289.874 kb on - strand, within BT0258at 289.918 kb on - strand, within BT0258at 289.918 kb on - strand, within BT0258at 289.919 kb on + strand, within BT0258at 289.985 kb on + strand, within BT0258at 289.986 kb on - strand, within BT0258at 289.986 kb on - strand, within BT0258at 289.986 kb on - strand, within BT0258at 290.009 kb on - strand, within BT0258at 290.009 kb on - strand, within BT0258at 290.014 kb on + strand, within BT0258at 290.014 kb on + strand, within BT0258at 290.015 kb on - strand, within BT0258at 290.018 kb on + strand, within BT0258at 290.060 kb on + strand, within BT0258at 290.102 kb on + strand, within BT0258at 290.119 kb on - strand, within BT0258at 290.166 kb on + strandat 290.209 kb on + strandat 290.209 kb on + strandat 290.210 kb on - strandat 290.220 kb on - strandat 290.275 kb on + strandat 290.275 kb on + strandat 290.275 kb on + strandat 290.278 kb on + strandat 290.315 kb on + strandat 290.316 kb on - strandat 290.343 kb on + strandat 290.344 kb on - strandat 290.348 kb on + strandat 290.349 kb on - strandat 290.352 kb on + strandat 290.352 kb on + strandat 290.353 kb on - strandat 290.405 kb on + strandat 290.413 kb on + strandat 290.420 kb on + strandat 290.420 kb on + strandat 290.432 kb on - strandat 290.432 kb on - strandat 290.662 kb on - strand, within BT0259at 290.665 kb on + strand, within BT0259at 290.765 kb on + strand, within BT0259at 290.773 kb on + strand, within BT0259at 290.773 kb on + strand, within BT0259at 290.774 kb on - strand, within BT0259at 290.825 kb on + strand, within BT0259at 290.826 kb on - strand, within BT0259at 290.826 kb on - strand, within BT0259at 290.844 kb on + strand, within BT0259at 290.865 kb on + strand, within BT0259at 290.984 kb on + strand, within BT0259at 290.985 kb on - strand, within BT0259at 291.007 kb on - strand, within BT0259at 291.009 kb on - strand, within BT0259at 291.094 kb on - strand, within BT0259at 291.133 kb on + strand, within BT0259at 291.229 kb on + strandat 291.232 kb on + strandat 291.268 kb on - strandat 291.272 kb on - strandat 291.285 kb on + strandat 291.288 kb on + strandat 291.295 kb on + strandat 291.296 kb on - strandat 291.296 kb on - strandat 291.299 kb on + strandat 291.306 kb on + strandat 291.307 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction N-Acetyl-D-glucosamine (N)
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287,414 - BT0257 0.76 +0.1
287,486 - BT0257 0.79 -1.9
287,553 - BT0257 0.81 -1.1
287,553 - BT0257 0.81 -1.5
287,765 - BT0257 0.88 -0.4
287,807 - BT0257 0.90 -0.9
287,807 - BT0257 0.90 -1.8
287,999 - +0.5
288,141 + -1.5
288,142 - -0.1
288,142 - -0.8
288,142 - -0.3
288,146 - +1.1
288,230 - -0.8
288,341 - -0.1
288,357 + -0.1
288,379 + -2.8
288,403 + -1.3
288,403 + -0.5
288,465 - -1.9
288,468 + -1.9
288,546 - BT0258 0.10 -0.8
288,598 + BT0258 0.13 -1.8
288,608 + BT0258 0.14 -1.1
288,678 - BT0258 0.17 -2.4
288,678 - BT0258 0.17 -4.3
288,678 - BT0258 0.17 -0.8
288,693 - BT0258 0.18 +1.5
288,742 - BT0258 0.20 -1.3
288,763 - BT0258 0.21 -4.6
288,771 + BT0258 0.22 -1.5
288,850 - BT0258 0.26 -5.4
288,865 + BT0258 0.26 -1.5
288,969 + BT0258 0.32 -0.5
289,010 + BT0258 0.34 -3.3
289,101 + BT0258 0.38 -0.1
289,101 + BT0258 0.38 -2.6
289,125 + BT0258 0.39 -3.2
289,188 - BT0258 0.43 -2.3
289,233 - BT0258 0.45 -1.6
289,233 - BT0258 0.45 -0.8
289,361 - BT0258 0.51 -1.3
289,413 + BT0258 0.54 -2.4
289,414 - BT0258 0.54 -3.8
289,544 - BT0258 0.60 -2.8
289,605 - BT0258 0.64 -2.8
289,628 - BT0258 0.65 +1.5
289,629 + BT0258 0.65 -1.1
289,629 + BT0258 0.65 -0.1
289,652 + BT0258 0.66 -1.1
289,741 - BT0258 0.70 -3.2
289,796 + BT0258 0.73 -0.6
289,797 - BT0258 0.73 -0.8
289,874 - BT0258 0.77 -4.9
289,918 - BT0258 0.79 -1.1
289,918 - BT0258 0.79 -2.3
289,919 + BT0258 0.79 -2.7
289,985 + BT0258 0.83 -0.5
289,986 - BT0258 0.83 -1.3
289,986 - BT0258 0.83 -3.6
289,986 - BT0258 0.83 -0.8
290,009 - BT0258 0.84 -3.4
290,009 - BT0258 0.84 -2.1
290,014 + BT0258 0.84 -0.1
290,014 + BT0258 0.84 -2.6
290,015 - BT0258 0.84 -2.9
290,018 + BT0258 0.84 -1.8
290,060 + BT0258 0.86 -3.0
290,102 + BT0258 0.89 -2.2
290,119 - BT0258 0.89 -1.1
290,166 + -0.1
290,209 + -0.8
290,209 + -2.5
290,210 - -3.8
290,220 - -1.5
290,275 + -2.5
290,275 + -1.5
290,275 + -0.5
290,278 + -0.5
290,315 + -1.3
290,316 - -3.8
290,343 + -1.6
290,344 - -0.8
290,348 + +1.5
290,349 - -0.1
290,352 + -2.4
290,352 + -3.6
290,353 - +0.7
290,405 + -1.3
290,413 + -2.7
290,420 + +0.5
290,420 + +1.5
290,432 - -1.0
290,432 - +1.5
290,662 - BT0259 0.24 -0.2
290,665 + BT0259 0.25 -0.1
290,765 + BT0259 0.38 -0.1
290,773 + BT0259 0.39 -0.5
290,773 + BT0259 0.39 -0.5
290,774 - BT0259 0.39 -0.3
290,825 + BT0259 0.45 +1.2
290,826 - BT0259 0.45 -0.5
290,826 - BT0259 0.45 +0.9
290,844 + BT0259 0.48 -0.8
290,865 + BT0259 0.50 +0.7
290,984 + BT0259 0.65 -0.1
290,985 - BT0259 0.66 +0.9
291,007 - BT0259 0.68 -1.1
291,009 - BT0259 0.69 -0.4
291,094 - BT0259 0.79 -0.7
291,133 + BT0259 0.84 -1.1
291,229 + -1.6
291,232 + +0.1
291,268 - +0.9
291,272 - -0.3
291,285 + -1.2
291,288 + +1.5
291,295 + +0.9
291,296 - -0.7
291,296 - -0.2
291,299 + -1.1
291,306 + -1.3
291,307 - +0.5

Or see this region's nucleotide sequence