Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35580

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,437,699	-		RR42_RS35575	0.65	-0.1
3,437,703	+		RR42_RS35575	0.65	+0.8
3,437,704	+		RR42_RS35575	0.65	-0.4
3,437,705	-		RR42_RS35575	0.65	-1.1
3,437,705	-		RR42_RS35575	0.65	+0.7
3,437,705	-		RR42_RS35575	0.65	+1.0
3,437,705	-		RR42_RS35575	0.65	-0.9
3,437,737	-		RR42_RS35575	0.67	-0.6
3,437,737	-		RR42_RS35575	0.67	+0.9
3,437,737	-		RR42_RS35575	0.67	+1.0
3,437,737	-		RR42_RS35575	0.67	+0.0
3,437,807	+		RR42_RS35575	0.71	+0.0
3,437,841	+		RR42_RS35575	0.73	-0.3
3,437,841	+		RR42_RS35575	0.73	-2.0
3,437,841	+		RR42_RS35575	0.73	-0.4
3,437,842	-		RR42_RS35575	0.73	-0.3
3,437,858	+		RR42_RS35575	0.74	-0.1
3,437,858	+		RR42_RS35575	0.74	+0.5
3,437,859	-		RR42_RS35575	0.74	+1.9
3,437,893	-		RR42_RS35575	0.76	-0.9
3,437,937	+		RR42_RS35575	0.79	-2.0
3,437,937	+		RR42_RS35575	0.79	-0.8
3,437,938	-		RR42_RS35575	0.79	+0.7
3,438,182	-				+1.1
3,438,218	+				+1.9
3,438,271	+				+0.8
3,438,271	+				+0.2
3,438,271	+				+0.1
3,438,271	+				-1.3
3,438,272	-				-0.3
3,438,272	-				+0.1
3,438,306	+				-0.2
3,438,307	-				+0.3
3,438,327	-				-1.4
3,438,327	-				-0.1
3,438,366	+				+0.1
3,438,366	+				+0.7
3,438,366	+				+0.2
3,438,379	-				-0.0
3,438,379	-				+0.1
3,438,448	+				+0.2
3,438,449	-				-0.3
3,438,449	-				-0.7
3,438,499	+				-0.6
3,438,500	-				+0.2
3,438,500	-				-0.9
3,438,579	+				+0.7
3,438,580	-				+0.8
3,438,601	+				-0.3
3,438,602	-				+1.1
3,438,612	+				+0.4
3,438,613	-				-0.2
3,438,618	+				-0.4
3,438,619	-				-2.0
3,438,619	-				-0.9
3,438,861	+		RR42_RS35580	0.12	+0.0
3,438,862	-		RR42_RS35580	0.12	-0.6
3,438,889	+		RR42_RS35580	0.14	-1.8
3,438,890	-		RR42_RS35580	0.14	-0.4
3,438,913	+		RR42_RS35580	0.16	-0.7
3,438,914	-		RR42_RS35580	0.16	-1.1
3,438,973	+		RR42_RS35580	0.19	-1.0
3,439,117	+		RR42_RS35580	0.29	-0.6
3,439,117	+		RR42_RS35580	0.29	+0.0
3,439,118	-		RR42_RS35580	0.29	-0.1
3,439,118	-		RR42_RS35580	0.29	-0.2
3,439,118	-		RR42_RS35580	0.29	-0.5
3,439,118	-		RR42_RS35580	0.29	-0.2
3,439,375	+		RR42_RS35580	0.45	+0.4
3,439,375	+		RR42_RS35580	0.45	+1.0
3,439,376	-		RR42_RS35580	0.45	+0.1
3,439,376	-		RR42_RS35580	0.45	+0.6
3,439,396	+		RR42_RS35580	0.47	-0.6
3,439,396	+		RR42_RS35580	0.47	-0.5
3,439,397	-		RR42_RS35580	0.47	+0.6
3,439,397	-		RR42_RS35580	0.47	-0.4
3,439,397	-		RR42_RS35580	0.47	-0.4
3,439,437	+		RR42_RS35580	0.49	-0.3
3,439,437	+		RR42_RS35580	0.49	+0.2
3,439,438	-		RR42_RS35580	0.49	+0.2
3,439,440	+		RR42_RS35580	0.49	-0.0
3,439,440	+		RR42_RS35580	0.49	-0.8
3,439,440	+		RR42_RS35580	0.49	-0.9
3,439,503	+		RR42_RS35580	0.53	+0.3
3,439,504	-		RR42_RS35580	0.53	+0.4
3,439,552	-		RR42_RS35580	0.57	-2.3
3,439,622	+		RR42_RS35580	0.61	-1.3
3,439,622	+		RR42_RS35580	0.61	+0.8
3,439,622	+		RR42_RS35580	0.61	+0.0
3,439,622	+		RR42_RS35580	0.61	-0.9
3,439,623	-		RR42_RS35580	0.61	+1.9
3,439,716	+		RR42_RS35580	0.67	-1.0
3,439,811	-		RR42_RS35580	0.73	-0.3
3,439,864	-		RR42_RS35580	0.77	-0.3
3,439,865	+		RR42_RS35580	0.77	-0.7
3,439,865	+		RR42_RS35580	0.77	-0.7
3,439,865	+		RR42_RS35580	0.77	-0.5
3,439,866	-		RR42_RS35580	0.77	+0.3
3,439,866	-		RR42_RS35580	0.77	-0.1
3,439,866	-		RR42_RS35580	0.77	-0.5
3,439,866	-		RR42_RS35580	0.77	+0.5
3,440,112	-				-1.3
3,440,127	+				-3.4
3,440,127	+				-1.1
3,440,127	+				-0.7
3,440,128	-				+1.7
3,440,140	+				+0.6
3,440,141	-				+0.2
3,440,141	-				+1.3
3,440,141	-				+0.3
3,440,152	+				+0.2
3,440,152	+				-0.0
3,440,182	+				+0.6
3,440,182	+				+0.1
3,440,182	+				+0.9
3,440,182	+				-0.7
3,440,183	-				+0.7
3,440,209	+				-0.5
3,440,284	+				-0.4
3,440,284	+				+1.5
3,440,285	-				-0.8
3,440,285	-				-0.4
3,440,285	-				-1.2
3,440,306	-				+0.6
3,440,427	+				+0.1
3,440,497	-				-0.6
3,440,503	+				-0.4
3,440,528	-				-2.4
3,440,528	-				-0.5
3,440,606	+				-0.0
3,440,606	+				-2.4
3,440,606	+				-0.6
3,440,607	-				+0.9
3,440,607	-				-0.2
3,440,607	-				-0.3
3,440,637	+				-0.1
3,440,637	+				+0.0
3,440,637	+				-0.4
3,440,638	-				+0.6
3,440,641	+				+1.5
3,440,641	+				+1.2
3,440,641	+				-0.5
3,440,641	+				+0.1
3,440,641	+				+0.5
3,440,641	+				-0.7
3,440,641	+				-1.0
3,440,642	-				+0.3
3,440,642	-				-2.0
3,440,654	+				+0.6
3,440,655	-				+1.0
3,440,655	-				-0.3
3,440,700	+				-0.2
3,440,700	+				+0.3
3,440,735	+				+0.2
3,440,735	+				-0.2
3,440,736	-				-0.2
3,440,736	-				+0.8
3,440,740	+				-1.0
3,440,740	+				-0.8
3,440,740	+				-1.7
3,440,741	-				-1.6
3,440,747	-				+0.1
3,440,813	+				-1.2
3,440,813	+				-0.2
3,440,814	-				+0.4
3,440,860	-				-1.7
3,440,950	+				-1.5
3,440,950	+				-0.6
3,440,975	+				+0.2
3,441,093	+				-0.5
3,441,094	-				+1.0
3,441,101	+				+0.5