Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35440

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,403,295	+		RR42_RS35435	0.42	+1.3
3,403,295	+		RR42_RS35435	0.42	+1.0
3,403,309	+		RR42_RS35435	0.43	-1.6
3,403,309	+		RR42_RS35435	0.43	+0.8
3,403,309	+		RR42_RS35435	0.43	+0.3
3,403,309	+		RR42_RS35435	0.43	-1.3
3,403,309	+		RR42_RS35435	0.43	+0.4
3,403,309	+		RR42_RS35435	0.43	-1.1
3,403,309	+		RR42_RS35435	0.43	-0.2
3,403,310	-		RR42_RS35435	0.43	-0.2
3,403,310	-		RR42_RS35435	0.43	-0.2
3,403,310	-		RR42_RS35435	0.43	+0.3
3,403,310	-		RR42_RS35435	0.43	-0.8
3,403,409	-		RR42_RS35435	0.49	+0.6
3,403,509	+		RR42_RS35435	0.55	-0.7
3,403,525	+		RR42_RS35435	0.56	-0.8
3,403,693	+		RR42_RS35435	0.66	+0.0
3,403,694	-		RR42_RS35435	0.66	-0.1
3,403,696	+		RR42_RS35435	0.66	-0.7
3,403,697	-		RR42_RS35435	0.66	-0.4
3,403,732	-		RR42_RS35435	0.69	+0.0
3,403,860	+		RR42_RS35435	0.76	+0.0
3,403,861	-		RR42_RS35435	0.76	-1.2
3,403,905	+		RR42_RS35435	0.79	+0.6
3,403,988	+		RR42_RS35435	0.84	-1.5
3,403,988	+		RR42_RS35435	0.84	-0.2
3,404,194	-				-1.0
3,404,260	+				+0.6
3,404,260	+				-2.2
3,404,261	-				-0.4
3,404,261	-				+0.3
3,404,261	-				+0.1
3,404,472	+		RR42_RS35440	0.24	+1.3
3,404,575	+		RR42_RS35440	0.36	-0.4
3,404,576	-		RR42_RS35440	0.36	-0.6
3,404,576	-		RR42_RS35440	0.36	+0.3
3,404,675	-		RR42_RS35440	0.47	+1.2
3,404,692	-		RR42_RS35440	0.49	-1.3
3,404,693	+		RR42_RS35440	0.49	-0.4
3,404,693	+		RR42_RS35440	0.49	-1.7
3,404,693	+		RR42_RS35440	0.49	-0.6
3,404,694	-		RR42_RS35440	0.49	-0.7
3,404,888	-		RR42_RS35440	0.72	-2.0
3,404,888	-		RR42_RS35440	0.72	-0.2
3,405,019	+		RR42_RS35440	0.87	-0.2
3,405,020	-		RR42_RS35440	0.87	-2.9
3,405,020	-		RR42_RS35440	0.87	-1.1
3,405,068	-				+0.6
3,405,076	+				-1.9
3,405,076	+				+0.7
3,405,076	+				-1.2
3,405,077	-				+1.5
3,405,077	-				+0.7
3,405,077	-				+0.0
3,405,156	+				-1.3
3,405,157	-				+0.4
3,405,328	+		RR42_RS35445	0.35	+1.3
3,405,328	+		RR42_RS35445	0.35	+0.7
3,405,462	+		RR42_RS35445	0.77	+1.2
3,405,463	-		RR42_RS35445	0.77	+0.8
3,405,463	-		RR42_RS35445	0.77	+2.0
3,405,534	+				+0.9
3,405,535	-				+1.1
3,405,535	-				-0.0
3,405,546	+				-0.5
3,405,546	+				-0.0
3,405,546	+				+1.5
3,405,547	-				-0.5
3,405,564	+				+0.7
3,405,783	+		RR42_RS35450	0.54	-0.2
3,405,875	+		RR42_RS35450	0.75	-1.5
3,405,957	-				-0.5
3,406,066	-		RR42_RS35455	0.19	+1.6