Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35330

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
3,379,387	-				-1.6
3,379,387	-				+0.6
3,379,517	+		RR42_RS35325	0.16	-1.2
3,379,517	+		RR42_RS35325	0.16	-0.4
3,379,518	-		RR42_RS35325	0.16	+1.6
3,379,522	+		RR42_RS35325	0.17	+0.0
3,379,524	+		RR42_RS35325	0.17	-0.0
3,379,524	+		RR42_RS35325	0.17	-0.0
3,379,525	-		RR42_RS35325	0.17	-1.5
3,379,525	-		RR42_RS35325	0.17	-1.5
3,379,525	-		RR42_RS35325	0.17	+0.1
3,379,528	+		RR42_RS35325	0.18	+0.8
3,379,529	-		RR42_RS35325	0.18	-1.7
3,379,587	-		RR42_RS35325	0.27	-0.2
3,379,597	+		RR42_RS35325	0.29	+0.3
3,379,597	+		RR42_RS35325	0.29	+0.4
3,379,597	+		RR42_RS35325	0.29	-0.1
3,379,597	+		RR42_RS35325	0.29	-0.2
3,379,597	+		RR42_RS35325	0.29	+0.5
3,379,598	-		RR42_RS35325	0.29	-0.5
3,379,598	-		RR42_RS35325	0.29	-0.8
3,379,598	-		RR42_RS35325	0.29	-0.4
3,379,598	-		RR42_RS35325	0.29	-2.5
3,379,599	+		RR42_RS35325	0.29	-0.2
3,379,617	+		RR42_RS35325	0.32	-0.1
3,379,690	-		RR42_RS35325	0.44	+0.1
3,379,690	-		RR42_RS35325	0.44	+1.6
3,379,876	+		RR42_RS35325	0.74	+0.7
3,379,893	-		RR42_RS35325	0.76	+0.8
3,379,975	+		RR42_RS35325	0.90	+0.7
3,379,978	-				+1.0
3,379,978	-				+0.5
3,379,978	-				-0.5
3,379,978	-				+0.2
3,379,978	-				-0.6
3,380,010	-				-1.1
3,380,028	-				+0.1
3,380,089	+				-0.8
3,380,098	-				+0.0
3,380,143	+				-1.2
3,380,144	-				+0.7
3,380,151	+				-0.0
3,380,151	+				-0.1
3,380,151	+				+0.2
3,380,151	+				-1.5
3,380,155	-				+0.0
3,380,155	-				+0.8
3,380,240	-				+0.0
3,380,288	+				-0.3
3,380,288	+				-0.3
3,380,288	+				+0.1
3,380,288	+				+2.1
3,380,416	+				+1.0
3,380,435	-				+2.3
3,380,473	-		RR42_RS35330	0.12	-0.2
3,380,483	+		RR42_RS35330	0.13	-0.1
3,380,598	+		RR42_RS35330	0.23	+0.2
3,380,669	+		RR42_RS35330	0.29	-0.2
3,380,701	+		RR42_RS35330	0.31	+0.6
3,380,702	-		RR42_RS35330	0.31	-0.8
3,380,805	-		RR42_RS35330	0.40	+0.3
3,380,805	-		RR42_RS35330	0.40	-0.0
3,380,814	-		RR42_RS35330	0.41	-0.3
3,380,903	+		RR42_RS35330	0.48	+0.6
3,380,903	+		RR42_RS35330	0.48	+2.1
3,380,903	+		RR42_RS35330	0.48	+0.5
3,380,993	+		RR42_RS35330	0.56	+0.3
3,380,994	-		RR42_RS35330	0.56	-0.5
3,380,994	-		RR42_RS35330	0.56	-0.0
3,380,994	-		RR42_RS35330	0.56	-0.7
3,381,016	+		RR42_RS35330	0.58	+0.4
3,381,067	+		RR42_RS35330	0.62	-1.4
3,381,187	+		RR42_RS35330	0.73	-1.1
3,381,188	-		RR42_RS35330	0.73	-0.4
3,381,188	-		RR42_RS35330	0.73	-0.8
3,381,258	-		RR42_RS35330	0.79	-0.2
3,381,509	+				+0.6
3,381,509	+				-1.1
3,381,563	+				+1.8
3,381,718	-				-1.3
3,381,718	-				-1.6
3,381,766	-				+1.5
3,381,778	-				-1.1
3,381,778	-				+0.6
3,381,778	-				-0.6
3,381,925	-		RR42_RS35335	0.46	+0.2
3,382,035	+		RR42_RS35335	0.73	-1.9
3,382,035	+		RR42_RS35335	0.73	-0.8
3,382,038	+		RR42_RS35335	0.74	+0.4
3,382,038	+		RR42_RS35335	0.74	-0.5
3,382,039	-		RR42_RS35335	0.74	-1.1
3,382,039	-		RR42_RS35335	0.74	-0.4
3,382,161	-				-0.0
3,382,225	+				-0.4
3,382,226	-				+0.5
3,382,279	+				-0.2
3,382,305	+				-0.6
3,382,306	-				+0.4
3,382,351	+				-0.4
3,382,359	+				-0.6
3,382,360	-				-1.8
3,382,405	+				-0.9
3,382,405	+				+0.4
3,382,405	+				+0.0
3,382,406	-				+2.0
3,382,409	+				+0.5
3,382,410	-				+1.1
3,382,410	-				-0.6
3,382,410	-				-0.9
3,382,410	-				+0.6
3,382,410	-				-0.6
3,382,410	-				+0.1
3,382,448	-				+0.4
3,382,448	-				-0.3
3,382,448	-				+0.3
3,382,448	-				-0.4
3,382,451	+				+0.5
3,382,451	+				+0.2
3,382,451	+				-0.5
3,382,451	+				-2.1
3,382,452	-				+1.4
3,382,452	-				+0.9
3,382,481	-				-0.4