Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS33840 and RR42_RS33845 are separated by 234 nucleotides RR42_RS33845 and RR42_RS33850 are separated by 135 nucleotides RR42_RS33850 and RR42_RS33855 are separated by 80 nucleotides
RR42_RS33840: RR42_RS33840 - alpha/beta hydrolase, at 3,022,967 to 3,023,998
_RS33840
RR42_RS33845: RR42_RS33845 - MerR family transcriptional regulator, at 3,024,233 to 3,024,583
_RS33845
RR42_RS33850: RR42_RS33850 - hypothetical protein, at 3,024,719 to 3,025,159
_RS33850
RR42_RS33855: RR42_RS33855 - TetR family transcriptional regulator, at 3,025,240 to 3,025,908
_RS33855
Position (kb)
3024
3025
3026 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3023.742 kb on + strand, within RR42_RS33840 at 3023.742 kb on + strand, within RR42_RS33840 at 3023.743 kb on - strand, within RR42_RS33840 at 3023.743 kb on - strand, within RR42_RS33840 at 3023.826 kb on + strand, within RR42_RS33840 at 3024.034 kb on - strand at 3024.077 kb on + strand at 3024.077 kb on + strand at 3024.078 kb on - strand at 3024.143 kb on + strand at 3024.213 kb on - strand at 3024.213 kb on - strand at 3024.441 kb on + strand, within RR42_RS33845 at 3024.441 kb on + strand, within RR42_RS33845 at 3024.441 kb on + strand, within RR42_RS33845 at 3024.442 kb on - strand, within RR42_RS33845 at 3024.442 kb on - strand, within RR42_RS33845 at 3024.577 kb on + strand at 3024.677 kb on + strand at 3024.678 kb on - strand at 3024.764 kb on + strand, within RR42_RS33850 at 3024.764 kb on + strand, within RR42_RS33850 at 3025.013 kb on + strand, within RR42_RS33850 at 3025.158 kb on - strand at 3025.189 kb on + strand at 3025.189 kb on + strand at 3025.190 kb on - strand at 3025.190 kb on - strand at 3025.190 kb on - strand at 3025.278 kb on + strand at 3025.278 kb on + strand at 3025.278 kb on + strand at 3025.392 kb on - strand, within RR42_RS33855 at 3025.392 kb on - strand, within RR42_RS33855 at 3025.470 kb on - strand, within RR42_RS33855 at 3025.583 kb on + strand, within RR42_RS33855 at 3025.583 kb on + strand, within RR42_RS33855 at 3025.868 kb on + strand at 3025.906 kb on + strand at 3025.906 kb on + strand at 3025.907 kb on - strand at 3025.907 kb on - strand at 3025.907 kb on - strand at 3025.907 kb on - strand at 3025.907 kb on - strand at 3026.049 kb on + strand at 3026.050 kb on - strand at 3026.055 kb on - strand at 3026.067 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 3,023,742 + RR42_RS33840 0.75 -1.5 3,023,742 + RR42_RS33840 0.75 +0.0 3,023,743 - RR42_RS33840 0.75 -0.4 3,023,743 - RR42_RS33840 0.75 +0.3 3,023,826 + RR42_RS33840 0.83 -1.5 3,024,034 - -1.0 3,024,077 + +1.0 3,024,077 + -1.5 3,024,078 - +0.9 3,024,143 + +0.8 3,024,213 - -0.2 3,024,213 - +2.1 3,024,441 + RR42_RS33845 0.59 -2.7 3,024,441 + RR42_RS33845 0.59 -0.6 3,024,441 + RR42_RS33845 0.59 +0.6 3,024,442 - RR42_RS33845 0.60 -0.6 3,024,442 - RR42_RS33845 0.60 +0.4 3,024,577 + +0.8 3,024,677 + -0.4 3,024,678 - +1.0 3,024,764 + RR42_RS33850 0.10 -1.0 3,024,764 + RR42_RS33850 0.10 -1.0 3,025,013 + RR42_RS33850 0.67 -1.5 3,025,158 - +0.2 3,025,189 + -1.1 3,025,189 + +0.0 3,025,190 - -0.9 3,025,190 - -0.5 3,025,190 - +0.4 3,025,278 + -0.5 3,025,278 + -0.3 3,025,278 + +0.7 3,025,392 - RR42_RS33855 0.23 +0.3 3,025,392 - RR42_RS33855 0.23 -0.2 3,025,470 - RR42_RS33855 0.34 +0.4 3,025,583 + RR42_RS33855 0.51 +1.0 3,025,583 + RR42_RS33855 0.51 -0.8 3,025,868 + +1.0 3,025,906 + -0.4 3,025,906 + -0.5 3,025,907 - +0.5 3,025,907 - +0.1 3,025,907 - +1.6 3,025,907 - +1.0 3,025,907 - -0.4 3,026,049 + +0.5 3,026,050 - -0.2 3,026,055 - +0.0 3,026,067 - +1.3
Or see this region's nucleotide sequence