Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33210

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,856,920	-		RR42_RS33205	0.40	-0.9
2,856,920	-		RR42_RS33205	0.40	+0.0
2,856,920	-		RR42_RS33205	0.40	-0.5
2,856,988	+		RR42_RS33205	0.45	-0.7
2,856,989	-		RR42_RS33205	0.45	-1.2
2,856,989	-		RR42_RS33205	0.45	+2.6
2,857,055	+		RR42_RS33205	0.50	+0.4
2,857,055	+		RR42_RS33205	0.50	-0.5
2,857,055	+		RR42_RS33205	0.50	-1.1
2,857,055	+		RR42_RS33205	0.50	-0.0
2,857,056	-		RR42_RS33205	0.50	-1.4
2,857,076	+		RR42_RS33205	0.51	-0.4
2,857,077	-		RR42_RS33205	0.51	-0.9
2,857,089	+		RR42_RS33205	0.52	-1.0
2,857,114	+		RR42_RS33205	0.54	-1.4
2,857,126	+		RR42_RS33205	0.55	-1.7
2,857,141	+		RR42_RS33205	0.56	+0.9
2,857,141	+		RR42_RS33205	0.56	-0.3
2,857,142	-		RR42_RS33205	0.56	+0.3
2,857,169	+		RR42_RS33205	0.58	-1.8
2,857,169	+		RR42_RS33205	0.58	+0.4
2,857,169	+		RR42_RS33205	0.58	+0.8
2,857,169	+		RR42_RS33205	0.58	+0.6
2,857,170	-		RR42_RS33205	0.58	+0.1
2,857,170	-		RR42_RS33205	0.58	-0.6
2,857,285	+		RR42_RS33205	0.66	-0.2
2,857,285	+		RR42_RS33205	0.66	-0.3
2,857,341	+		RR42_RS33205	0.70	+2.0
2,857,341	+		RR42_RS33205	0.70	+0.6
2,857,342	-		RR42_RS33205	0.70	+0.2
2,857,344	+		RR42_RS33205	0.70	+0.3
2,857,345	-		RR42_RS33205	0.70	-0.5
2,857,345	-		RR42_RS33205	0.70	-0.4
2,857,369	-		RR42_RS33205	0.72	-0.4
2,857,459	+		RR42_RS33205	0.78	+0.8
2,857,469	+		RR42_RS33205	0.79	-0.8
2,857,469	+		RR42_RS33205	0.79	+0.8
2,857,470	-		RR42_RS33205	0.79	+1.0
2,857,470	-		RR42_RS33205	0.79	-1.1
2,857,529	+		RR42_RS33205	0.83	-0.6
2,857,530	-		RR42_RS33205	0.83	-1.4
2,857,682	-				-1.7
2,857,685	-				-1.5
2,857,753	+				+0.5
2,857,754	-				-0.6
2,857,754	-				+2.6
2,857,764	-				+0.2
2,857,764	-				-1.1
2,857,780	+				+0.6
2,857,796	-				-0.1
2,857,796	-				-1.4
2,857,846	+				+0.0
2,857,879	-		RR42_RS33210	0.14	-1.9
2,857,943	+		RR42_RS33210	0.23	-0.6
2,858,089	+		RR42_RS33210	0.42	-0.9
2,858,096	-		RR42_RS33210	0.42	+0.3
2,858,098	-		RR42_RS33210	0.43	-1.7
2,858,125	+		RR42_RS33210	0.46	+0.4
2,858,126	-		RR42_RS33210	0.46	-2.6
2,858,267	-		RR42_RS33210	0.65	+1.0
2,858,358	+		RR42_RS33210	0.77	+0.8
2,858,359	-		RR42_RS33210	0.77	-1.0
2,858,359	-		RR42_RS33210	0.77	+1.0
2,858,475	-				+1.4
2,858,475	-				+1.0
2,858,545	-				+0.7
2,858,556	+				+1.6
2,858,610	-				+0.6
2,858,642	-				+1.5
2,858,681	+				-0.2
2,858,681	+				-0.1
2,858,681	+				+0.7
2,858,682	-				-0.0
2,858,730	-				+0.0
2,858,954	-				-0.1
2,858,994	-		RR42_RS33215	0.12	-0.9
2,859,105	-		RR42_RS33215	0.21	-1.0
2,859,139	+		RR42_RS33215	0.24	-1.3
2,859,139	+		RR42_RS33215	0.24	-1.1
2,859,140	-		RR42_RS33215	0.24	+0.5
2,859,332	+		RR42_RS33215	0.41	-0.6
2,859,356	+		RR42_RS33215	0.43	+0.6
2,859,365	+		RR42_RS33215	0.43	+0.4
2,859,398	+		RR42_RS33215	0.46	+1.0
2,859,464	+		RR42_RS33215	0.52	+3.6
2,859,464	+		RR42_RS33215	0.52	-0.2
2,859,464	+		RR42_RS33215	0.52	-0.2
2,859,502	-		RR42_RS33215	0.55	-2.2
2,859,502	-		RR42_RS33215	0.55	-1.6
2,859,523	-		RR42_RS33215	0.57	-1.8
2,859,530	+		RR42_RS33215	0.58	-1.0
2,859,530	+		RR42_RS33215	0.58	+1.6
2,859,530	+		RR42_RS33215	0.58	-1.9