Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32810

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,757,112	+		RR42_RS32805	0.55	+0.2
2,757,113	-		RR42_RS32805	0.55	+2.6
2,757,113	-		RR42_RS32805	0.55	-0.6
2,757,490	-				+1.5
2,757,534	+				+1.6
2,757,610	-				-0.4
2,757,643	+				-0.5
2,757,656	+				-0.1
2,757,656	+				+0.9
2,757,657	-				+0.3
2,757,657	-				-0.6
2,757,662	+				-0.1
2,757,662	+				+0.5
2,757,662	+				+0.0
2,757,663	-				-0.3
2,757,663	-				+2.6
2,757,996	+		RR42_RS32810	0.42	-1.0
2,757,996	+		RR42_RS32810	0.42	-0.1
2,757,997	-		RR42_RS32810	0.42	-1.4
2,758,139	+		RR42_RS32810	0.82	+0.7
2,758,139	+		RR42_RS32810	0.82	-0.6
2,758,140	-		RR42_RS32810	0.82	-0.1
2,758,140	-		RR42_RS32810	0.82	-0.4
2,758,140	-		RR42_RS32810	0.82	+0.3
2,758,140	-		RR42_RS32810	0.82	-0.6
2,758,201	+				+0.5
2,758,213	+				+1.0
2,758,317	+				-0.8
2,758,362	-				-1.9
2,758,395	-				-1.3
2,758,395	-				-0.1
2,758,402	+				+0.4
2,758,402	+				-1.5
2,758,419	+				-0.2
2,758,511	-		RR42_RS32815	0.15	+0.1
2,758,511	-		RR42_RS32815	0.15	+0.3
2,758,511	-		RR42_RS32815	0.15	-0.7
2,758,511	-		RR42_RS32815	0.15	+1.0
2,758,683	-		RR42_RS32815	0.43	-0.1
2,758,708	+		RR42_RS32815	0.47	-0.9
2,758,715	-		RR42_RS32815	0.48	-1.3
2,758,846	-		RR42_RS32815	0.69	+0.8
2,758,972	+		RR42_RS32815	0.89	+0.6
2,758,972	+		RR42_RS32815	0.89	+0.0
2,758,972	+		RR42_RS32815	0.89	+2.0
2,758,975	+		RR42_RS32815	0.90	+0.0
2,758,976	-		RR42_RS32815	0.90	-1.8
2,759,051	+				+0.0
2,759,052	-				+1.0
2,759,175	+		RR42_RS32820	0.18	+0.9
2,759,175	+		RR42_RS32820	0.18	-0.7
2,759,176	-		RR42_RS32820	0.19	+0.1
2,759,176	-		RR42_RS32820	0.19	-0.7
2,759,176	-		RR42_RS32820	0.19	+0.5