Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32230

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,616,545	+		RR42_RS32225	0.31	-1.9
2,616,545	+		RR42_RS32225	0.31	-1.4
2,616,545	+		RR42_RS32225	0.31	-0.7
2,616,545	+		RR42_RS32225	0.31	+0.7
2,616,545	+		RR42_RS32225	0.31	+0.0
2,616,545	+		RR42_RS32225	0.31	+0.0
2,616,545	+		RR42_RS32225	0.31	+1.0
2,616,545	+		RR42_RS32225	0.31	-1.2
2,616,546	-		RR42_RS32225	0.31	+0.8
2,616,546	-		RR42_RS32225	0.31	-0.6
2,616,546	-		RR42_RS32225	0.31	-0.6
2,616,583	-		RR42_RS32225	0.35	+1.6
2,616,583	-		RR42_RS32225	0.35	-0.5
2,616,583	-		RR42_RS32225	0.35	+0.1
2,616,583	-		RR42_RS32225	0.35	+1.0
2,616,583	-		RR42_RS32225	0.35	-0.0
2,616,664	+		RR42_RS32225	0.43	-0.4
2,616,664	+		RR42_RS32225	0.43	-1.0
2,616,665	-		RR42_RS32225	0.43	-0.6
2,616,804	-		RR42_RS32225	0.57	-1.7
2,616,896	+		RR42_RS32225	0.66	-0.5
2,616,897	-		RR42_RS32225	0.66	-0.1
2,616,897	-		RR42_RS32225	0.66	-1.5
2,616,897	-		RR42_RS32225	0.66	+1.4
2,617,002	-		RR42_RS32225	0.77	+0.0
2,617,025	+		RR42_RS32225	0.79	-0.3
2,617,025	+		RR42_RS32225	0.79	+0.4
2,617,025	+		RR42_RS32225	0.79	+0.0
2,617,026	-		RR42_RS32225	0.79	-1.3
2,617,026	-		RR42_RS32225	0.79	-0.3
2,617,220	+				-0.6
2,617,236	+				-0.7
2,617,237	-				-0.8
2,617,237	-				-2.2
2,617,308	+				-1.1
2,617,308	+				-0.6
2,617,309	-				-2.7
2,617,310	+				-2.3
2,617,310	+				-0.5
2,617,310	+				+1.3
2,617,310	+				-0.4
2,617,312	+				+0.6
2,617,312	+				+0.2
2,617,312	+				-0.3
2,617,312	+				+0.0
2,617,312	+				+1.1
2,617,312	+				+0.1
2,617,312	+				-1.6
2,617,313	-				+3.0
2,617,313	-				-0.4
2,617,313	-				-0.7
2,617,313	-				-0.7
2,617,315	+				+0.6
2,617,315	+				+0.1
2,617,316	-				-0.2
2,617,348	+				-1.3
2,617,356	+				-1.1
2,617,357	-				-0.6
2,617,357	-				-0.5
2,617,388	+				+0.0
2,617,388	+				+0.2
2,617,389	-				+1.7
2,617,389	-				+0.4
2,617,394	+				-0.3
2,617,395	-				+0.0
2,617,459	+				-1.4
2,617,460	-				+0.1
2,617,460	-				+0.3
2,617,719	+		RR42_RS32230	0.32	+1.2
2,617,720	-		RR42_RS32230	0.32	+0.4
2,617,873	-		RR42_RS32230	0.48	+1.4
2,617,887	-		RR42_RS32230	0.49	-0.8
2,617,887	-		RR42_RS32230	0.49	+0.0
2,617,887	-		RR42_RS32230	0.49	+0.1
2,617,910	+		RR42_RS32230	0.51	+0.3
2,617,911	-		RR42_RS32230	0.51	+0.1
2,617,911	-		RR42_RS32230	0.51	-1.4
2,617,911	-		RR42_RS32230	0.51	-1.9
2,617,911	-		RR42_RS32230	0.51	-0.6
2,617,913	+		RR42_RS32230	0.52	-1.6
2,617,913	+		RR42_RS32230	0.52	-0.4
2,617,914	-		RR42_RS32230	0.52	-1.0
2,617,914	-		RR42_RS32230	0.52	+0.8
2,617,915	+		RR42_RS32230	0.52	-0.7
2,617,915	+		RR42_RS32230	0.52	-0.1
2,617,915	+		RR42_RS32230	0.52	-0.3
2,617,916	-		RR42_RS32230	0.52	-1.4
2,617,916	-		RR42_RS32230	0.52	-1.1
2,617,943	+		RR42_RS32230	0.55	-1.2
2,617,977	+		RR42_RS32230	0.58	-0.3
2,618,058	-		RR42_RS32230	0.66	-1.0
2,618,058	-		RR42_RS32230	0.66	-1.3
2,618,112	+		RR42_RS32230	0.72	+0.4
2,618,413	+				+0.6
2,618,425	-				+0.0
2,618,470	-				-1.4
2,618,470	-				-1.2
2,618,555	+		RR42_RS32235	0.11	+0.4
2,618,784	+		RR42_RS32235	0.30	-1.5
2,618,785	-		RR42_RS32235	0.30	+1.3
2,618,872	-		RR42_RS32235	0.38	-2.8
2,619,030	+		RR42_RS32235	0.51	+1.6
2,619,186	+		RR42_RS32235	0.65	-1.6
2,619,187	-		RR42_RS32235	0.65	-0.9
2,619,187	-		RR42_RS32235	0.65	-0.9
2,619,246	+		RR42_RS32235	0.70	-0.8
2,619,246	+		RR42_RS32235	0.70	-0.1
2,619,265	-		RR42_RS32235	0.72	-2.6
2,619,312	+		RR42_RS32235	0.76	+0.2
2,619,313	-		RR42_RS32235	0.76	+0.3
2,619,357	-		RR42_RS32235	0.79	-0.0