Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS31820
Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Vancomycin 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,515,072 | + | RR42_RS31810 | 0.15 | -0.7 | |
2,515,401 | - | RR42_RS31810 | 0.74 | +1.0 | |
2,515,566 | - | +5.4 | |||
2,515,686 | - | RR42_RS31815 | 0.31 | -1.2 | |
2,515,778 | + | RR42_RS31815 | 0.55 | +0.3 | |
2,515,778 | + | RR42_RS31815 | 0.55 | -0.6 | |
2,516,079 | - | +0.6 | |||
2,516,208 | + | RR42_RS31820 | 0.26 | -0.3 | |
2,516,209 | - | RR42_RS31820 | 0.26 | -0.7 | |
2,516,253 | - | RR42_RS31820 | 0.32 | -0.9 | |
2,516,339 | + | RR42_RS31820 | 0.42 | -1.0 | |
2,516,784 | - | -1.6 | |||
2,516,902 | + | +1.1 | |||
2,516,902 | + | -0.6 | |||
2,517,212 | + | RR42_RS31825 | 0.43 | +0.0 | |
2,517,213 | - | RR42_RS31825 | 0.43 | -0.4 | |
2,517,341 | - | RR42_RS31825 | 0.58 | -0.7 | |
2,517,554 | + | RR42_RS31825 | 0.83 | -0.6 | |
2,517,554 | + | RR42_RS31825 | 0.83 | -0.4 | |
2,517,686 | + | -1.7 |
Or see this region's nucleotide sequence