Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30375

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,187,540	+				-0.5
2,187,541	-				+0.7
2,187,541	-				+0.5
2,187,611	+		RR42_RS30370	0.12	-0.1
2,187,611	+		RR42_RS30370	0.12	-1.1
2,187,612	-		RR42_RS30370	0.12	+1.4
2,187,666	+		RR42_RS30370	0.20	-1.1
2,187,666	+		RR42_RS30370	0.20	-0.0
2,187,666	+		RR42_RS30370	0.20	-0.0
2,187,667	-		RR42_RS30370	0.20	+0.1
2,187,667	-		RR42_RS30370	0.20	-2.1
2,187,728	-		RR42_RS30370	0.29	+0.3
2,187,728	-		RR42_RS30370	0.29	-1.6
2,187,731	+		RR42_RS30370	0.29	-1.6
2,187,731	+		RR42_RS30370	0.29	+3.9
2,187,835	+		RR42_RS30370	0.44	-2.1
2,187,835	+		RR42_RS30370	0.44	-0.2
2,187,836	-		RR42_RS30370	0.45	+0.7
2,187,837	+		RR42_RS30370	0.45	-0.5
2,187,838	-		RR42_RS30370	0.45	-0.3
2,188,061	+		RR42_RS30370	0.77	-0.3
2,188,079	+		RR42_RS30370	0.79	-1.3
2,188,281	+				+1.4
2,188,281	+				+1.2
2,188,282	-				-0.7
2,188,282	-				+2.5
2,188,282	-				+1.9
2,188,282	-				+0.4
2,188,360	-				-0.0
2,188,360	-				-0.1
2,188,362	-				+0.6
2,188,373	-				+1.7
2,188,373	-				-2.5
2,188,376	+				+0.4
2,188,376	+				-0.5
2,188,377	-				-1.8
2,188,377	-				+0.3
2,188,377	-				-1.5
2,188,479	+				+0.3
2,188,480	-				-0.4
2,188,519	+				-0.9
2,188,520	-				+5.1
2,188,588	+		RR42_RS30375	0.11	+0.5
2,188,588	+		RR42_RS30375	0.11	+1.0
2,188,650	-		RR42_RS30375	0.16	-0.7
2,188,769	+		RR42_RS30375	0.25	-0.4
2,188,769	+		RR42_RS30375	0.25	+0.5
2,188,770	-		RR42_RS30375	0.25	-1.3
2,188,991	+		RR42_RS30375	0.42	-2.8
2,189,028	+		RR42_RS30375	0.45	+1.8
2,189,028	+		RR42_RS30375	0.45	-1.3
2,189,029	-		RR42_RS30375	0.45	-0.5
2,189,063	+		RR42_RS30375	0.48	-2.3
2,189,063	+		RR42_RS30375	0.48	-1.2
2,189,262	+		RR42_RS30375	0.64	-0.1
2,189,263	-		RR42_RS30375	0.64	-1.2
2,189,263	-		RR42_RS30375	0.64	-0.0
2,189,263	-		RR42_RS30375	0.64	+1.5
2,189,461	+		RR42_RS30375	0.80	-0.9
2,189,461	+		RR42_RS30375	0.80	+1.5
2,189,462	-		RR42_RS30375	0.80	+0.9
2,189,527	+		RR42_RS30375	0.85	-0.5
2,189,528	-		RR42_RS30375	0.85	+0.8
2,189,528	-		RR42_RS30375	0.85	-3.1
2,189,566	+		RR42_RS30375	0.88	+0.3
2,189,567	-		RR42_RS30375	0.88	+0.2
2,189,567	-		RR42_RS30375	0.88	-0.0
2,189,603	+				-0.5
2,189,604	-				+0.6
2,189,604	-				-0.0
2,189,604	-				-0.2
2,189,607	+				+4.4
2,189,757	-		RR42_RS30380	0.10	-0.0
2,189,836	-		RR42_RS30380	0.22	-1.2
2,189,836	-		RR42_RS30380	0.22	+1.1
2,190,172	-		RR42_RS30380	0.74	+1.1
2,190,172	-		RR42_RS30380	0.74	-0.0
2,190,172	-		RR42_RS30380	0.74	-1.3
2,190,172	-		RR42_RS30380	0.74	+0.0
2,190,242	+		RR42_RS30380	0.84	+0.2
2,190,460	+				-0.1
2,190,460	+				-0.0
2,190,463	+				+1.0
2,190,464	-				-1.5
2,190,583	+		RR42_RS30385	0.11	+0.5
2,190,583	+		RR42_RS30385	0.11	-1.0
2,190,584	-		RR42_RS30385	0.11	+0.0
2,190,584	-		RR42_RS30385	0.11	+0.0
2,190,611	-		RR42_RS30385	0.14	+0.4
2,190,628	+		RR42_RS30385	0.15	-2.4
2,190,628	+		RR42_RS30385	0.15	-0.6
2,190,628	+		RR42_RS30385	0.15	+0.5
2,190,628	+		RR42_RS30385	0.15	-0.1
2,190,629	-		RR42_RS30385	0.16	-1.1
2,190,629	-		RR42_RS30385	0.16	+0.8
2,190,629	-		RR42_RS30385	0.16	-1.0
2,190,667	+		RR42_RS30385	0.19	+0.2
2,190,670	+		RR42_RS30385	0.19	+0.7
2,190,671	-		RR42_RS30385	0.20	+0.6
2,190,707	+		RR42_RS30385	0.23	-0.1
2,190,708	-		RR42_RS30385	0.23	+2.6
2,190,708	-		RR42_RS30385	0.23	+0.2
2,190,708	-		RR42_RS30385	0.23	+1.6
2,190,708	-		RR42_RS30385	0.23	-1.6
2,190,710	-		RR42_RS30385	0.23	-1.8
2,190,710	-		RR42_RS30385	0.23	-0.5