Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS30075

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,118,289	-		RR42_RS30070	0.16	-0.4
2,118,412	+		RR42_RS30070	0.29	+1.0
2,118,412	+		RR42_RS30070	0.29	+0.7
2,118,413	-		RR42_RS30070	0.29	+1.6
2,118,416	+		RR42_RS30070	0.30	+0.8
2,118,416	+		RR42_RS30070	0.30	-0.2
2,118,416	+		RR42_RS30070	0.30	+0.4
2,118,416	+		RR42_RS30070	0.30	-2.1
2,118,416	+		RR42_RS30070	0.30	-0.8
2,118,417	-		RR42_RS30070	0.30	+0.6
2,118,417	-		RR42_RS30070	0.30	+0.5
2,118,515	+		RR42_RS30070	0.40	+0.2
2,118,581	-		RR42_RS30070	0.47	-0.8
2,118,766	+		RR42_RS30070	0.67	+0.3
2,118,775	+		RR42_RS30070	0.68	+1.8
2,118,775	+		RR42_RS30070	0.68	+0.3
2,118,778	+		RR42_RS30070	0.68	+1.7
2,118,778	+		RR42_RS30070	0.68	-1.4
2,118,898	-		RR42_RS30070	0.81	-0.2
2,118,898	-		RR42_RS30070	0.81	-0.1
2,118,898	-		RR42_RS30070	0.81	-1.1
2,119,003	-				+1.3
2,119,135	-				+2.1
2,119,225	+				-0.6
2,119,226	-				+0.8
2,119,301	-				-0.6
2,119,301	-				+0.9
2,119,415	+		RR42_RS30075	0.17	+1.0
2,119,415	+		RR42_RS30075	0.17	+0.4
2,119,416	-		RR42_RS30075	0.17	+0.2
2,119,416	-		RR42_RS30075	0.17	-0.0
2,119,416	-		RR42_RS30075	0.17	+1.0
2,119,416	-		RR42_RS30075	0.17	-0.8
2,119,523	-		RR42_RS30075	0.28	-0.9
2,119,523	-		RR42_RS30075	0.28	+0.4
2,119,613	+		RR42_RS30075	0.37	-2.0
2,119,614	-		RR42_RS30075	0.37	-1.3
2,119,614	-		RR42_RS30075	0.37	+0.4
2,119,690	-		RR42_RS30075	0.45	-0.5
2,119,690	-		RR42_RS30075	0.45	+0.4
2,119,739	+		RR42_RS30075	0.50	-0.5
2,119,739	+		RR42_RS30075	0.50	-0.5
2,119,811	+		RR42_RS30075	0.57	+0.6
2,120,013	-		RR42_RS30075	0.77	+0.1
2,120,037	+		RR42_RS30075	0.80	-0.1
2,120,109	-		RR42_RS30075	0.87	-0.1
2,120,232	+				-0.4
2,120,232	+				+1.1
2,120,232	+				-0.9
2,120,233	-				+0.4
2,120,235	-				-0.7
2,120,254	+				+0.1
2,120,255	-				-0.3
2,120,255	-				+0.6
2,120,418	+				-0.4
2,120,418	+				+1.0
2,120,418	+				-0.1
2,120,418	+				-0.9
2,120,418	+				-1.4
2,120,419	-				+0.1
2,120,419	-				+1.6
2,120,425	+				-0.3
2,120,426	-				+0.4
2,120,426	-				-0.3
2,120,457	+				+0.2
2,120,457	+				-0.2
2,120,457	+				-1.0
2,120,457	+				-1.7
2,120,458	-		RR42_RS30080	0.10	-1.6
2,120,458	-		RR42_RS30080	0.10	+0.0
2,120,516	+		RR42_RS30080	0.14	-1.4
2,120,565	+		RR42_RS30080	0.18	-0.2
2,120,566	-		RR42_RS30080	0.18	-1.6
2,120,623	+		RR42_RS30080	0.22	-1.1
2,120,624	-		RR42_RS30080	0.22	-0.4
2,120,824	-		RR42_RS30080	0.36	-1.0
2,120,824	-		RR42_RS30080	0.36	-0.9
2,120,824	-		RR42_RS30080	0.36	+1.0
2,121,083	-		RR42_RS30080	0.55	+0.6
2,121,105	+		RR42_RS30080	0.57	+0.1
2,121,106	-		RR42_RS30080	0.57	-2.1
2,121,128	+		RR42_RS30080	0.58	-0.7
2,121,141	+		RR42_RS30080	0.59	+1.7
2,121,141	+		RR42_RS30080	0.59	+1.0
2,121,141	+		RR42_RS30080	0.59	+1.0
2,121,229	-		RR42_RS30080	0.66	-0.5
2,121,229	-		RR42_RS30080	0.66	-1.6
2,121,229	-		RR42_RS30080	0.66	+0.6