Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29960

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,087,694	-		RR42_RS29955	0.46	-1.8
2,087,694	-		RR42_RS29955	0.46	-0.9
2,087,737	+		RR42_RS29955	0.49	-0.6
2,087,738	-		RR42_RS29955	0.49	+0.3
2,087,797	+		RR42_RS29955	0.53	-0.6
2,087,798	-		RR42_RS29955	0.53	-1.2
2,087,911	+		RR42_RS29955	0.61	-2.3
2,087,912	-		RR42_RS29955	0.61	-0.2
2,088,028	+		RR42_RS29955	0.70	-0.0
2,088,028	+		RR42_RS29955	0.70	-2.3
2,088,029	-		RR42_RS29955	0.70	-0.4
2,088,029	-		RR42_RS29955	0.70	-1.3
2,088,193	+		RR42_RS29955	0.81	-0.3
2,088,193	+		RR42_RS29955	0.81	-0.4
2,088,194	-		RR42_RS29955	0.81	-0.3
2,088,337	+				+1.7
2,088,370	+				+1.7
2,088,370	+				-0.5
2,088,383	+				-0.8
2,088,384	-				+2.5
2,088,384	-				-0.8
2,088,432	+				-0.5
2,088,432	+				-0.8
2,088,433	-				+0.4
2,088,533	-		RR42_RS29960	0.15	+4.0
2,088,541	+		RR42_RS29960	0.17	-0.6
2,088,541	+		RR42_RS29960	0.17	-0.9
2,088,542	-		RR42_RS29960	0.17	-1.7
2,088,542	-		RR42_RS29960	0.17	-0.6
2,088,649	+		RR42_RS29960	0.39	+0.7
2,088,650	-		RR42_RS29960	0.39	+1.5
2,088,677	+		RR42_RS29960	0.45	-1.8
2,088,677	+		RR42_RS29960	0.45	-1.5
2,088,677	+		RR42_RS29960	0.45	-1.1
2,088,677	+		RR42_RS29960	0.45	+0.5
2,088,677	+		RR42_RS29960	0.45	-0.7
2,088,678	-		RR42_RS29960	0.45	-0.8
2,088,678	-		RR42_RS29960	0.45	+0.0
2,088,686	+		RR42_RS29960	0.47	+1.0
2,088,687	-		RR42_RS29960	0.47	-0.1
2,088,687	-		RR42_RS29960	0.47	-0.3
2,088,687	-		RR42_RS29960	0.47	-0.8
2,088,829	+		RR42_RS29960	0.76	+1.8
2,088,830	-		RR42_RS29960	0.76	-0.5
2,088,866	+		RR42_RS29960	0.83	-1.2
2,089,007	+				-0.5
2,089,007	+				-0.4
2,089,077	+				+0.7
2,089,077	+				-1.0
2,089,077	+				+1.0
2,089,078	-				+1.2
2,089,078	-				-1.1
2,089,119	+				-0.5
2,089,119	+				-1.8
2,089,120	-				+1.2
2,089,120	-				-0.3
2,089,135	+				+2.2
2,089,136	-				-0.1
2,089,186	+				+2.1
2,089,187	-				-0.0
2,089,187	-				+0.3
2,089,238	+				-1.0
2,089,252	+				-0.4
2,089,252	+				-0.6
2,089,252	+				+0.7
2,089,252	+				-1.2
2,089,253	-				+1.0
2,089,262	+				+1.2
2,089,262	+				-1.3
2,089,262	+				-0.3
2,089,263	-				-1.2
2,089,352	+				-0.8
2,089,352	+				+0.8
2,089,352	+				-0.6
2,089,353	-				-0.4
2,089,374	+				+1.0
2,089,375	-				-0.1
2,089,498	+		RR42_RS29965	0.15	-1.3
2,089,498	+		RR42_RS29965	0.15	-0.9
2,089,556	-		RR42_RS29965	0.21	-1.4
2,089,586	+		RR42_RS29965	0.24	-1.0
2,089,587	-		RR42_RS29965	0.24	-0.3
2,089,684	+		RR42_RS29965	0.34	-1.7
2,089,684	+		RR42_RS29965	0.34	-0.1
2,089,727	-		RR42_RS29965	0.38	+0.2
2,089,727	-		RR42_RS29965	0.38	-0.8
2,089,727	-		RR42_RS29965	0.38	-0.1
2,089,859	+		RR42_RS29965	0.52	-0.0