Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29615

Experiment: R2A with Vancomycin 0.5 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Vancomycin 0.5 mg/ml
2,010,916	+				-1.4
2,010,917	-				-0.3
2,010,917	-				-0.0
2,010,938	+				-1.7
2,010,938	+				-1.0
2,010,938	+				-1.1
2,010,938	+				-0.4
2,010,939	-				-0.1
2,010,939	-				-0.0
2,010,939	-				-0.0
2,010,947	-				+0.1
2,010,947	-				+1.6
2,011,037	+				-0.8
2,011,038	-				+0.2
2,011,038	-				+0.7
2,011,080	+				+0.1
2,011,114	-				+0.9
2,011,179	+				-1.7
2,011,179	+				-1.3
2,011,180	-				-0.4
2,011,180	-				+0.6
2,011,180	-				-1.1
2,011,249	+				-0.4
2,011,249	+				+0.1
2,011,250	-				-0.2
2,011,250	-				-1.1
2,011,250	-				+1.2
2,011,314	+				+0.2
2,011,314	+				+0.6
2,011,314	+				+0.1
2,011,314	+				-0.2
2,011,315	-				+0.4
2,011,315	-				-1.6
2,011,315	-				+0.6
2,011,384	+				-0.6
2,011,384	+				-0.0
2,011,503	+				+0.7
2,011,504	-				-1.0
2,011,704	+		RR42_RS29610	0.57	-0.4
2,011,704	+		RR42_RS29610	0.57	+1.0
2,011,705	-		RR42_RS29610	0.57	+0.6
2,011,843	+				-1.3
2,011,889	+				-1.4
2,011,890	-				+0.9
2,011,940	-				-2.0
2,012,051	+		RR42_RS29615	0.13	-1.3
2,012,052	-		RR42_RS29615	0.13	+1.4
2,012,134	-		RR42_RS29615	0.19	-0.0
2,012,134	-		RR42_RS29615	0.19	-0.2
2,012,176	+		RR42_RS29615	0.22	+0.7
2,012,421	+		RR42_RS29615	0.40	-1.2
2,012,421	+		RR42_RS29615	0.40	+1.0
2,012,421	+		RR42_RS29615	0.40	-0.7
2,012,421	+		RR42_RS29615	0.40	+0.9
2,012,421	+		RR42_RS29615	0.40	-0.5
2,012,421	+				+1.0
2,012,422	-		RR42_RS29615	0.40	+0.8
2,012,422	-		RR42_RS29615	0.40	+0.1
2,012,422	-		RR42_RS29615	0.40	+0.7
2,012,677	-		RR42_RS29615	0.58	-0.0
2,012,677	-		RR42_RS29615	0.58	+0.8
2,012,679	+		RR42_RS29615	0.58	-0.4
2,012,679	+		RR42_RS29615	0.58	+0.2
2,012,679	+		RR42_RS29615	0.58	+1.2
2,012,680	-		RR42_RS29615	0.58	+1.8
2,012,759	-		RR42_RS29615	0.64	-0.7
2,012,777	-		RR42_RS29615	0.65	+0.4
2,012,777	-		RR42_RS29615	0.65	-1.3
2,012,802	+		RR42_RS29615	0.67	-0.3
2,012,869	-		RR42_RS29615	0.72	-0.3
2,013,130	+				+0.2
2,013,201	-				-0.3
2,013,201	-				-0.8
2,013,206	+				-0.5
2,013,212	+				-0.8
2,013,212	+				-0.4
2,013,212	+				+0.2
2,013,212	+				-1.0
2,013,213	-				+2.1
2,013,213	-				+1.0
2,013,235	-				-1.2
2,013,240	+				-1.9
2,013,388	+				+1.0
2,013,543	+				-0.3
2,013,543	+				-2.0
2,013,543	+				+1.9
2,013,544	-				+2.1
2,013,544	-				+1.5
2,013,544	-				+0.5
2,013,569	+				-0.3
2,013,571	-				+0.1
2,013,594	-				-0.1
2,013,637	+				-0.0
2,013,637	+				-1.0
2,013,685	-				+1.7
2,013,796	+		RR42_RS29620	0.16	-0.9
2,013,796	+		RR42_RS29620	0.16	+2.0
2,013,797	-		RR42_RS29620	0.16	+0.1
2,013,864	+		RR42_RS29620	0.22	-0.6
2,013,865	-		RR42_RS29620	0.22	-0.5
2,013,865	-		RR42_RS29620	0.22	-0.7
2,014,035	+		RR42_RS29620	0.37	+1.0
2,014,035	+		RR42_RS29620	0.37	+0.1
2,014,036	-		RR42_RS29620	0.37	+0.3
2,014,036	-		RR42_RS29620	0.37	+1.4
2,014,053	+		RR42_RS29620	0.38	-1.4
2,014,073	+		RR42_RS29620	0.40	+1.2
2,014,073	+		RR42_RS29620	0.40	-0.2
2,014,107	+		RR42_RS29620	0.43	-0.1
2,014,107	+		RR42_RS29620	0.43	+0.2
2,014,226	+		RR42_RS29620	0.54	-1.8
2,014,226	+		RR42_RS29620	0.54	-1.4