Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS29500 and RR42_RS29505 are separated by 19 nucleotides RR42_RS29505 and RR42_RS29510 are separated by 138 nucleotides
RR42_RS29500: RR42_RS29500 - acyl-CoA dehydrogenase, at 1,975,606 to 1,976,781
_RS29500
RR42_RS29505: RR42_RS29505 - hypothetical protein, at 1,976,801 to 1,977,181
_RS29505
RR42_RS29510: RR42_RS29510 - hypothetical protein, at 1,977,320 to 1,978,909
_RS29510
Position (kb)
1976
1977
1978 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1975.831 kb on + strand, within RR42_RS29500 at 1975.831 kb on + strand, within RR42_RS29500 at 1975.831 kb on + strand, within RR42_RS29500 at 1975.832 kb on - strand, within RR42_RS29500 at 1975.832 kb on - strand, within RR42_RS29500 at 1975.832 kb on - strand, within RR42_RS29500 at 1976.071 kb on + strand, within RR42_RS29500 at 1976.071 kb on + strand, within RR42_RS29500 at 1976.071 kb on + strand, within RR42_RS29500 at 1976.071 kb on + strand, within RR42_RS29500 at 1976.072 kb on - strand, within RR42_RS29500 at 1976.072 kb on - strand, within RR42_RS29500 at 1976.380 kb on + strand, within RR42_RS29500 at 1976.380 kb on + strand, within RR42_RS29500 at 1976.381 kb on - strand, within RR42_RS29500 at 1976.381 kb on - strand, within RR42_RS29500 at 1976.386 kb on + strand, within RR42_RS29500 at 1976.386 kb on + strand, within RR42_RS29500 at 1976.387 kb on - strand, within RR42_RS29500 at 1976.387 kb on - strand, within RR42_RS29500 at 1976.527 kb on + strand, within RR42_RS29500 at 1976.528 kb on - strand, within RR42_RS29500 at 1976.539 kb on + strand, within RR42_RS29500 at 1976.698 kb on + strand at 1976.699 kb on - strand at 1976.825 kb on + strand at 1976.826 kb on - strand at 1976.826 kb on - strand at 1976.826 kb on - strand at 1976.826 kb on - strand at 1976.826 kb on - strand at 1977.002 kb on + strand, within RR42_RS29505 at 1977.002 kb on + strand, within RR42_RS29505 at 1977.003 kb on - strand, within RR42_RS29505 at 1977.151 kb on + strand at 1977.179 kb on + strand at 1977.179 kb on + strand at 1977.179 kb on + strand at 1977.179 kb on + strand at 1977.180 kb on - strand at 1977.180 kb on - strand at 1977.258 kb on + strand at 1977.258 kb on + strand at 1977.259 kb on - strand at 1977.260 kb on + strand at 1977.260 kb on + strand at 1977.261 kb on - strand at 1977.261 kb on - strand at 1977.329 kb on + strand at 1977.454 kb on - strand at 1977.527 kb on + strand, within RR42_RS29510 at 1977.527 kb on + strand, within RR42_RS29510 at 1977.527 kb on + strand, within RR42_RS29510 at 1977.527 kb on + strand, within RR42_RS29510 at 1977.527 kb on + strand, within RR42_RS29510 at 1977.527 kb on + strand, within RR42_RS29510 at 1977.528 kb on - strand, within RR42_RS29510 at 1977.528 kb on - strand, within RR42_RS29510 at 1977.528 kb on - strand, within RR42_RS29510 at 1977.528 kb on - strand, within RR42_RS29510 at 1977.528 kb on - strand, within RR42_RS29510 at 1977.528 kb on - strand, within RR42_RS29510 at 1977.615 kb on + strand, within RR42_RS29510 at 1977.615 kb on + strand, within RR42_RS29510 at 1977.616 kb on - strand, within RR42_RS29510 at 1977.634 kb on - strand, within RR42_RS29510 at 1977.637 kb on + strand, within RR42_RS29510 at 1977.638 kb on - strand, within RR42_RS29510 at 1977.752 kb on + strand, within RR42_RS29510 at 1977.770 kb on + strand, within RR42_RS29510 at 1977.770 kb on + strand, within RR42_RS29510 at 1977.771 kb on - strand, within RR42_RS29510 at 1977.776 kb on + strand, within RR42_RS29510 at 1977.776 kb on + strand, within RR42_RS29510 at 1977.776 kb on + strand, within RR42_RS29510 at 1977.777 kb on - strand, within RR42_RS29510 at 1977.777 kb on - strand, within RR42_RS29510 at 1977.902 kb on + strand, within RR42_RS29510 at 1977.903 kb on - strand, within RR42_RS29510 at 1977.981 kb on + strand, within RR42_RS29510 at 1978.128 kb on + strand, within RR42_RS29510 at 1978.129 kb on - strand, within RR42_RS29510 at 1978.129 kb on - strand, within RR42_RS29510 at 1978.129 kb on - strand, within RR42_RS29510
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 1,975,831 + RR42_RS29500 0.19 -0.4 1,975,831 + RR42_RS29500 0.19 -0.6 1,975,831 + RR42_RS29500 0.19 +2.3 1,975,832 - RR42_RS29500 0.19 -0.4 1,975,832 - RR42_RS29500 0.19 -1.4 1,975,832 - RR42_RS29500 0.19 -1.4 1,976,071 + RR42_RS29500 0.40 -1.8 1,976,071 + RR42_RS29500 0.40 +1.2 1,976,071 + RR42_RS29500 0.40 -0.7 1,976,071 + RR42_RS29500 0.40 -0.9 1,976,072 - RR42_RS29500 0.40 -1.4 1,976,072 - RR42_RS29500 0.40 +0.2 1,976,380 + RR42_RS29500 0.66 -0.4 1,976,380 + RR42_RS29500 0.66 -1.1 1,976,381 - RR42_RS29500 0.66 +1.1 1,976,381 - RR42_RS29500 0.66 +0.6 1,976,386 + RR42_RS29500 0.66 +0.2 1,976,386 + RR42_RS29500 0.66 +0.4 1,976,387 - RR42_RS29500 0.66 -1.0 1,976,387 - RR42_RS29500 0.66 -0.9 1,976,527 + RR42_RS29500 0.78 +0.7 1,976,528 - RR42_RS29500 0.78 +0.8 1,976,539 + RR42_RS29500 0.79 -1.7 1,976,698 + +1.7 1,976,699 - -0.4 1,976,825 + -0.0 1,976,826 - -0.2 1,976,826 - -0.0 1,976,826 - -1.1 1,976,826 - +0.2 1,976,826 - -0.7 1,977,002 + RR42_RS29505 0.53 +0.2 1,977,002 + RR42_RS29505 0.53 -1.8 1,977,003 - RR42_RS29505 0.53 -0.7 1,977,151 + -1.3 1,977,179 + -0.4 1,977,179 + -1.2 1,977,179 + +0.6 1,977,179 + -0.9 1,977,180 - +0.4 1,977,180 - +2.1 1,977,258 + -1.3 1,977,258 + +0.4 1,977,259 - -0.1 1,977,260 + -0.2 1,977,260 + -1.4 1,977,261 - -1.4 1,977,261 - -1.6 1,977,329 + +0.6 1,977,454 - -2.8 1,977,527 + RR42_RS29510 0.13 +0.3 1,977,527 + RR42_RS29510 0.13 -0.8 1,977,527 + RR42_RS29510 0.13 -0.8 1,977,527 + RR42_RS29510 0.13 -0.1 1,977,527 + RR42_RS29510 0.13 +0.4 1,977,527 + RR42_RS29510 0.13 +0.9 1,977,528 - RR42_RS29510 0.13 -0.5 1,977,528 - RR42_RS29510 0.13 +0.2 1,977,528 - RR42_RS29510 0.13 +0.3 1,977,528 - RR42_RS29510 0.13 +1.0 1,977,528 - RR42_RS29510 0.13 -0.4 1,977,528 - RR42_RS29510 0.13 -0.3 1,977,615 + RR42_RS29510 0.19 +0.8 1,977,615 + RR42_RS29510 0.19 -0.6 1,977,616 - RR42_RS29510 0.19 +1.2 1,977,634 - RR42_RS29510 0.20 +1.8 1,977,637 + RR42_RS29510 0.20 +0.2 1,977,638 - RR42_RS29510 0.20 +2.6 1,977,752 + RR42_RS29510 0.27 +0.7 1,977,770 + RR42_RS29510 0.28 +2.2 1,977,770 + RR42_RS29510 0.28 -0.6 1,977,771 - RR42_RS29510 0.28 +1.2 1,977,776 + RR42_RS29510 0.29 -0.6 1,977,776 + RR42_RS29510 0.29 -0.1 1,977,776 + RR42_RS29510 0.29 +2.2 1,977,777 - RR42_RS29510 0.29 -0.1 1,977,777 - RR42_RS29510 0.29 +0.6 1,977,902 + RR42_RS29510 0.37 +1.5 1,977,903 - RR42_RS29510 0.37 +0.1 1,977,981 + RR42_RS29510 0.42 +1.0 1,978,128 + RR42_RS29510 0.51 +0.6 1,978,129 - RR42_RS29510 0.51 +0.0 1,978,129 - RR42_RS29510 0.51 -0.0 1,978,129 - RR42_RS29510 0.51 +1.3
Or see this region's nucleotide sequence