Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26205 and RR42_RS26210 are separated by 71 nucleotides RR42_RS26210 and RR42_RS26215 are separated by 192 nucleotides RR42_RS26215 and RR42_RS26220 are separated by 182 nucleotides
RR42_RS26205: RR42_RS26205 - LysR family transcriptional regulator, at 1,237,265 to 1,238,263
_RS26205
RR42_RS26210: RR42_RS26210 - hypothetical protein, at 1,238,335 to 1,238,655
_RS26210
RR42_RS26215: RR42_RS26215 - diguanylate cyclase, at 1,238,848 to 1,239,825
_RS26215
RR42_RS26220: RR42_RS26220 - citrate lyase subunit beta, at 1,240,008 to 1,240,925
_RS26220
Position (kb) 1238
1239
1240 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1237.879 kb on + strand, within RR42_RS26205 at 1237.879 kb on + strand, within RR42_RS26205 at 1237.880 kb on - strand, within RR42_RS26205 at 1238.082 kb on + strand, within RR42_RS26205 at 1238.193 kb on + strand at 1238.194 kb on - strand at 1238.326 kb on + strand at 1238.332 kb on + strand at 1238.332 kb on + strand at 1238.333 kb on - strand at 1238.404 kb on + strand, within RR42_RS26210 at 1238.411 kb on - strand, within RR42_RS26210 at 1238.417 kb on + strand, within RR42_RS26210 at 1238.446 kb on + strand, within RR42_RS26210 at 1238.447 kb on - strand, within RR42_RS26210 at 1238.447 kb on - strand, within RR42_RS26210 at 1238.447 kb on - strand, within RR42_RS26210 at 1238.467 kb on + strand, within RR42_RS26210 at 1238.467 kb on + strand, within RR42_RS26210 at 1238.468 kb on - strand, within RR42_RS26210 at 1238.468 kb on - strand, within RR42_RS26210 at 1238.479 kb on + strand, within RR42_RS26210 at 1238.499 kb on + strand, within RR42_RS26210 at 1238.548 kb on + strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.549 kb on - strand, within RR42_RS26210 at 1238.551 kb on + strand, within RR42_RS26210 at 1238.552 kb on - strand, within RR42_RS26210 at 1238.552 kb on - strand, within RR42_RS26210 at 1238.563 kb on + strand, within RR42_RS26210 at 1238.564 kb on - strand, within RR42_RS26210 at 1238.575 kb on + strand, within RR42_RS26210 at 1238.575 kb on + strand, within RR42_RS26210 at 1238.812 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.781 kb on + strand at 1239.782 kb on - strand at 1239.783 kb on + strand at 1239.783 kb on + strand at 1239.824 kb on - strand at 1239.824 kb on - strand at 1239.952 kb on + strand at 1239.952 kb on + strand at 1240.096 kb on + strand at 1240.301 kb on + strand, within RR42_RS26220 at 1240.312 kb on + strand, within RR42_RS26220
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 1,237,879 + RR42_RS26205 0.61 +0.7 1,237,879 + RR42_RS26205 0.61 -1.6 1,237,880 - RR42_RS26205 0.62 +0.4 1,238,082 + RR42_RS26205 0.82 -0.6 1,238,193 + +0.5 1,238,194 - -0.1 1,238,326 + -0.8 1,238,332 + -0.6 1,238,332 + -0.3 1,238,333 - -0.8 1,238,404 + RR42_RS26210 0.21 -0.1 1,238,411 - RR42_RS26210 0.24 +0.5 1,238,417 + RR42_RS26210 0.26 +0.6 1,238,446 + RR42_RS26210 0.35 -1.5 1,238,447 - RR42_RS26210 0.35 -0.0 1,238,447 - RR42_RS26210 0.35 +0.0 1,238,447 - RR42_RS26210 0.35 -0.7 1,238,467 + RR42_RS26210 0.41 -0.9 1,238,467 + RR42_RS26210 0.41 +1.0 1,238,468 - RR42_RS26210 0.41 -0.5 1,238,468 - RR42_RS26210 0.41 +0.8 1,238,479 + RR42_RS26210 0.45 +0.1 1,238,499 + RR42_RS26210 0.51 +2.1 1,238,548 + RR42_RS26210 0.66 -2.1 1,238,549 - RR42_RS26210 0.67 -0.5 1,238,549 - RR42_RS26210 0.67 +0.7 1,238,549 - RR42_RS26210 0.67 +0.7 1,238,549 - RR42_RS26210 0.67 +0.5 1,238,549 - RR42_RS26210 0.67 -0.3 1,238,549 - RR42_RS26210 0.67 -0.2 1,238,551 + RR42_RS26210 0.67 +0.8 1,238,552 - RR42_RS26210 0.68 +0.6 1,238,552 - RR42_RS26210 0.68 +0.0 1,238,563 + RR42_RS26210 0.71 -0.8 1,238,564 - RR42_RS26210 0.71 +1.5 1,238,575 + RR42_RS26210 0.75 -0.2 1,238,575 + RR42_RS26210 0.75 -0.1 1,238,812 + +0.5 1,239,781 + +1.6 1,239,781 + +0.1 1,239,781 + -0.6 1,239,781 + -0.6 1,239,781 + -2.3 1,239,781 + -0.5 1,239,781 + -0.4 1,239,782 - -0.1 1,239,783 + +0.9 1,239,783 + -1.0 1,239,824 - -0.7 1,239,824 - -3.1 1,239,952 + -0.8 1,239,952 + -1.2 1,240,096 + -0.1 1,240,301 + RR42_RS26220 0.32 -1.2 1,240,312 + RR42_RS26220 0.33 -0.9
Or see this region's nucleotide sequence