Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24740 and RR42_RS24745 are separated by 99 nucleotides RR42_RS24745 and RR42_RS24750 are separated by 251 nucleotides RR42_RS24750 and RR42_RS24755 are separated by 140 nucleotides
RR42_RS24740: RR42_RS24740 - hydrolase, at 887,872 to 888,567
_RS24740
RR42_RS24745: RR42_RS24745 - hypothetical protein, at 888,667 to 889,308
_RS24745
RR42_RS24750: RR42_RS24750 - LysR family transcriptional regulator, at 889,560 to 889,904
_RS24750
RR42_RS24755: RR42_RS24755 - ATP synthase subunit beta, at 890,045 to 893,467
_RS24755
Position (kb) 889
890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.573 kb on + strand at 888.573 kb on + strand at 888.574 kb on - strand at 888.574 kb on - strand at 888.574 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.663 kb on - strand at 888.755 kb on + strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.895 kb on + strand, within RR42_RS24745 at 888.908 kb on + strand, within RR42_RS24745 at 888.909 kb on - strand, within RR42_RS24745 at 889.024 kb on - strand, within RR42_RS24745 at 889.134 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.169 kb on + strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.366 kb on - strand at 889.373 kb on + strand at 889.373 kb on + strand at 889.446 kb on + strand at 889.446 kb on + strand at 889.447 kb on - strand at 889.459 kb on + strand at 889.470 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand at 889.572 kb on + strand at 889.572 kb on + strand at 889.572 kb on + strand at 889.572 kb on + strand at 889.573 kb on - strand at 889.650 kb on + strand, within RR42_RS24750 at 889.715 kb on - strand, within RR42_RS24750 at 889.715 kb on - strand, within RR42_RS24750 at 889.792 kb on - strand, within RR42_RS24750 at 889.847 kb on - strand, within RR42_RS24750 at 889.847 kb on - strand, within RR42_RS24750 at 889.936 kb on + strand at 890.007 kb on - strand at 890.007 kb on - strand at 890.056 kb on + strand at 890.057 kb on - strand at 890.057 kb on - strand at 890.226 kb on + strand at 890.243 kb on + strand at 890.244 kb on - strand at 890.343 kb on + strand at 890.454 kb on - strand, within RR42_RS24755 at 890.454 kb on - strand, within RR42_RS24755 at 890.463 kb on - strand, within RR42_RS24755 at 890.463 kb on - strand, within RR42_RS24755 at 890.642 kb on - strand, within RR42_RS24755 at 890.759 kb on - strand, within RR42_RS24755 at 890.759 kb on - strand, within RR42_RS24755 at 890.861 kb on + strand, within RR42_RS24755 at 890.861 kb on + strand, within RR42_RS24755 at 890.861 kb on + strand, within RR42_RS24755 at 890.862 kb on - strand, within RR42_RS24755 at 890.862 kb on - strand, within RR42_RS24755 at 890.862 kb on - strand, within RR42_RS24755
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 888,573 + -0.1 888,573 + +1.5 888,574 - -0.0 888,574 - +0.1 888,574 - -1.3 888,636 - -0.3 888,636 - -0.4 888,636 - -1.2 888,636 - -0.8 888,663 - +0.4 888,755 + RR42_RS24745 0.14 +0.0 888,756 - RR42_RS24745 0.14 +1.7 888,756 - RR42_RS24745 0.14 -0.5 888,756 - RR42_RS24745 0.14 -0.1 888,895 + RR42_RS24745 0.36 -0.5 888,908 + RR42_RS24745 0.38 -1.0 888,909 - RR42_RS24745 0.38 +0.7 889,024 - RR42_RS24745 0.56 -0.2 889,134 - RR42_RS24745 0.73 -0.3 889,137 - RR42_RS24745 0.73 -0.1 889,137 - RR42_RS24745 0.73 -0.1 889,137 - RR42_RS24745 0.73 +0.3 889,169 + RR42_RS24745 0.78 -0.6 889,170 - RR42_RS24745 0.78 -0.1 889,170 - RR42_RS24745 0.78 -2.1 889,170 - RR42_RS24745 0.78 +0.4 889,170 - RR42_RS24745 0.78 +0.3 889,366 - +0.4 889,373 + -0.7 889,373 + -0.1 889,446 + +0.9 889,446 + +1.2 889,447 - +0.0 889,459 + -0.2 889,470 + -1.4 889,521 + -0.1 889,521 + -2.0 889,521 + +0.4 889,521 + -0.3 889,572 + -1.8 889,572 + +0.8 889,572 + +0.2 889,572 + -0.3 889,573 - -0.3 889,650 + RR42_RS24750 0.26 -0.8 889,715 - RR42_RS24750 0.45 -0.2 889,715 - RR42_RS24750 0.45 +0.2 889,792 - RR42_RS24750 0.67 +0.9 889,847 - RR42_RS24750 0.83 -0.4 889,847 - RR42_RS24750 0.83 -0.2 889,936 + +0.0 890,007 - +0.5 890,007 - +0.2 890,056 + -1.0 890,057 - -0.4 890,057 - -1.0 890,226 + -0.7 890,243 + -0.4 890,244 - +0.5 890,343 + -0.0 890,454 - RR42_RS24755 0.12 +0.1 890,454 - RR42_RS24755 0.12 -0.3 890,463 - RR42_RS24755 0.12 -0.4 890,463 - RR42_RS24755 0.12 +0.8 890,642 - RR42_RS24755 0.17 +0.2 890,759 - RR42_RS24755 0.21 -0.4 890,759 - RR42_RS24755 0.21 +2.2 890,861 + RR42_RS24755 0.24 +0.5 890,861 + RR42_RS24755 0.24 -1.2 890,861 + RR42_RS24755 0.24 -0.7 890,862 - RR42_RS24755 0.24 -0.0 890,862 - RR42_RS24755 0.24 -0.2 890,862 - RR42_RS24755 0.24 +0.6
Or see this region's nucleotide sequence