Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24700 and RR42_RS24705 are separated by 30 nucleotides RR42_RS24705 and RR42_RS24710 are separated by 108 nucleotides
RR42_RS24700: RR42_RS24700 - glucose-methanol-choline oxidoreductase, at 877,139 to 878,821
_RS24700
RR42_RS24705: RR42_RS24705 - aldehyde dehydrogenase, at 878,852 to 880,273
_RS24705
RR42_RS24710: RR42_RS24710 - alpha/beta hydrolase, at 880,382 to 881,338
_RS24710
Position (kb) 878
879
880
881 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 878.186 kb on - strand, within RR42_RS24700 at 878.220 kb on + strand, within RR42_RS24700 at 878.221 kb on - strand, within RR42_RS24700 at 878.269 kb on - strand, within RR42_RS24700 at 878.346 kb on + strand, within RR42_RS24700 at 878.347 kb on - strand, within RR42_RS24700 at 878.455 kb on - strand, within RR42_RS24700 at 878.462 kb on + strand, within RR42_RS24700 at 878.463 kb on - strand, within RR42_RS24700 at 878.511 kb on + strand, within RR42_RS24700 at 878.512 kb on - strand, within RR42_RS24700 at 878.535 kb on + strand, within RR42_RS24700 at 878.536 kb on - strand, within RR42_RS24700 at 878.536 kb on - strand, within RR42_RS24700 at 878.803 kb on - strand at 878.901 kb on + strand at 878.971 kb on + strand at 879.199 kb on - strand, within RR42_RS24705 at 879.202 kb on - strand, within RR42_RS24705 at 879.414 kb on + strand, within RR42_RS24705 at 879.414 kb on + strand, within RR42_RS24705 at 879.415 kb on - strand, within RR42_RS24705 at 879.510 kb on + strand, within RR42_RS24705 at 879.510 kb on + strand, within RR42_RS24705 at 879.785 kb on + strand, within RR42_RS24705 at 879.786 kb on - strand, within RR42_RS24705 at 879.910 kb on - strand, within RR42_RS24705 at 879.910 kb on - strand, within RR42_RS24705 at 880.284 kb on - strand at 880.475 kb on + strand at 881.049 kb on + strand, within RR42_RS24710 at 881.259 kb on + strand at 881.259 kb on + strand at 881.260 kb on - strand at 881.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 878,186 - RR42_RS24700 0.62 -0.7 878,220 + RR42_RS24700 0.64 +0.4 878,221 - RR42_RS24700 0.64 -0.0 878,269 - RR42_RS24700 0.67 -2.1 878,346 + RR42_RS24700 0.72 +0.7 878,347 - RR42_RS24700 0.72 -0.7 878,455 - RR42_RS24700 0.78 -0.4 878,462 + RR42_RS24700 0.79 +0.2 878,463 - RR42_RS24700 0.79 -1.5 878,511 + RR42_RS24700 0.82 +1.2 878,512 - RR42_RS24700 0.82 -1.0 878,535 + RR42_RS24700 0.83 -0.9 878,536 - RR42_RS24700 0.83 -1.7 878,536 - RR42_RS24700 0.83 -3.7 878,803 - +0.7 878,901 + +0.1 878,971 + -0.0 879,199 - RR42_RS24705 0.24 -1.5 879,202 - RR42_RS24705 0.25 -0.9 879,414 + RR42_RS24705 0.40 -0.8 879,414 + RR42_RS24705 0.40 -1.3 879,415 - RR42_RS24705 0.40 +0.4 879,510 + RR42_RS24705 0.46 -0.2 879,510 + RR42_RS24705 0.46 -1.2 879,785 + RR42_RS24705 0.66 +0.4 879,786 - RR42_RS24705 0.66 -0.5 879,910 - RR42_RS24705 0.74 +0.2 879,910 - RR42_RS24705 0.74 -1.5 880,284 - +1.0 880,475 + +0.4 881,049 + RR42_RS24710 0.70 +0.4 881,259 + +0.1 881,259 + -0.6 881,260 - -1.5 881,260 - -1.6
Or see this region's nucleotide sequence